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Results: 18

1.

Global analysis of the HrpL regulon in the plant pathogen Pseudomonas syringae pv. tomato DC3000 reveals new regulon members with diverse functions.

Lam HN, Chakravarthy S, Wei HL, BuiNguyen H, Stodghill PV, Collmer A, Swingle BM, Cartinhour SW.

PLoS One. 2014 Aug 29;9(8):e106115. doi: 10.1371/journal.pone.0106115. eCollection 2014.

2.

Genomic plasticity enables phenotypic variation of Pseudomonas syringae pv. tomato DC3000.

Bao Z, Stodghill PV, Myers CR, Lam H, Wei HL, Chakravarthy S, Kvitko BH, Collmer A, Cartinhour SW, Schweitzer P, Swingle B.

PLoS One. 2014 Feb 6;9(2):e86628. doi: 10.1371/journal.pone.0086628. eCollection 2014.

3.

CrcZ and CrcX regulate carbon source utilization in Pseudomonas syringae pathovar tomato strain DC3000.

Filiatrault MJ, Stodghill PV, Wilson J, Butcher BG, Chen H, Myers CR, Cartinhour SW.

RNA Biol. 2013 Feb;10(2):245-55. doi: 10.4161/rna.23019. Epub 2013 Jan 25.

4.

Genome-wide identification of transcriptional start sites in the plant pathogen Pseudomonas syringae pv. tomato str. DC3000.

Filiatrault MJ, Stodghill PV, Myers CR, Bronstein PA, Butcher BG, Lam H, Grills G, Schweitzer P, Wang W, Schneider DJ, Cartinhour SW.

PLoS One. 2011;6(12):e29335. doi: 10.1371/journal.pone.0029335. Epub 2011 Dec 28.

5.

Characterization of the Fur regulon in Pseudomonas syringae pv. tomato DC3000.

Butcher BG, Bronstein PA, Myers CR, Stodghill PV, Bolton JJ, Markel EJ, Filiatrault MJ, Swingle B, Gaballa A, Helmann JD, Schneider DJ, Cartinhour SW.

J Bacteriol. 2011 Sep;193(18):4598-611. doi: 10.1128/JB.00340-11. Epub 2011 Jul 22.

6.

Construction of an rsmX co-variance model and identification of five rsmX non-coding RNAs in Pseudomonas syringae pv. tomato DC3000.

Moll S, Schneider DJ, Stodghill P, Myers CR, Cartinhour SW, Filiatrault MJ.

RNA Biol. 2010 Sep-Oct;7(5):508-16. Epub 2010 Sep 1.

7.

Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs.

Oliver HF, Orsi RH, Ponnala L, Keich U, Wang W, Sun Q, Cartinhour SW, Filiatrault MJ, Wiedmann M, Boor KJ.

BMC Genomics. 2009 Dec 30;10:641. doi: 10.1186/1471-2164-10-641.

8.

Complex responses to culture conditions in Pseudomonas syringae pv. tomato DC3000 continuous cultures: the role of iron in cell growth and virulence factor induction.

Kim BJ, Schneider DJ, Cartinhour SW, Shuler ML.

Biotechnol Bioeng. 2010 Apr 1;105(5):955-64. doi: 10.1002/bit.22609.

PMID:
19953673
9.

The effect of target vector selection on the invariance of classifier performance measures.

Sakk E, Schneider DJ, Myers CR, Cartinhour SW.

IEEE Trans Neural Netw. 2009 May;20(5):745-57. doi: 10.1109/TNN.2008.2011809. Epub 2009 Mar 31.

PMID:
19342348
10.

Effect of iron concentration on the growth rate of Pseudomonas syringae and the expression of virulence factors in hrp-inducing minimal medium.

Kim BJ, Park JH, Park TH, Bronstein PA, Schneider DJ, Cartinhour SW, Shuler ML.

Appl Environ Microbiol. 2009 May;75(9):2720-6. doi: 10.1128/AEM.02738-08. Epub 2009 Mar 6.

11.

Global transcriptional responses of Pseudomonas syringae DC3000 to changes in iron bioavailability in vitro.

Bronstein PA, Filiatrault MJ, Myers CR, Rutzke M, Schneider DJ, Cartinhour SW.

BMC Microbiol. 2008 Dec 2;8:209. doi: 10.1186/1471-2180-8-209.

12.

Whole-genome expression profiling defines the HrpL regulon of Pseudomonas syringae pv. tomato DC3000, allows de novo reconstruction of the Hrp cis clement, and identifies novel coregulated genes.

Ferreira AO, Myers CR, Gordon JS, Martin GB, Vencato M, Collmer A, Wehling MD, Alfano JR, Moreno-Hagelsieb G, Lamboy WF, DeClerck G, Schneider DJ, Cartinhour SW.

Mol Plant Microbe Interact. 2006 Nov;19(11):1167-79.

13.

Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5.

Paulsen IT, Press CM, Ravel J, Kobayashi DY, Myers GS, Mavrodi DV, DeBoy RT, Seshadri R, Ren Q, Madupu R, Dodson RJ, Durkin AS, Brinkac LM, Daugherty SC, Sullivan SA, Rosovitz MJ, Gwinn ML, Zhou L, Schneider DJ, Cartinhour SW, Nelson WC, Weidman J, Watkins K, Tran K, Khouri H, Pierson EA, Pierson LS 3rd, Thomashow LS, Loper JE.

Nat Biotechnol. 2005 Jul;23(7):873-8. Epub 2005 Jun 26. Erratum in: Nat Biotechnol. 2006 Apr;24(4):466.

PMID:
15980861
14.

A high-throughput AFLP-based method for constructing integrated genetic and physical maps: progress toward a sorghum genome map.

Klein PE, Klein RR, Cartinhour SW, Ulanch PE, Dong J, Obert JA, Morishige DT, Schlueter SD, Childs KL, Ale M, Mullet JE.

Genome Res. 2000 Jun;10(6):789-807.

15.

ACEDB: a database for genome information.

Walsh S, Anderson M, Cartinhour SW.

Methods Biochem Anal. 1998;39:299-318. No abstract available.

PMID:
9707936
16.

Public informatics resources for rice and other grasses.

Cartinhour SW.

Plant Mol Biol. 1997 Sep;35(1-2):241-51. Review.

PMID:
9291977
17.

Multiple sequence versions of the Oxytricha fallax 81-MAC alternate processing family.

Herrick G, Cartinhour SW, Williams KR, Kotter KP.

J Protozool. 1987 Nov;34(4):429-34. Review.

PMID:
3123649
18.
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