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Results: 16

1.

Shared signatures between rheumatoid arthritis, systemic lupus erythematosus and Sjögren¿s syndrome uncovered through gene expression meta-analysis.

Toro-Domínguez D, Carmona-Sáez P, Alarcón-Riquelme ME.

Arthritis Res Ther. 2014 Dec 3;16(6):489. [Epub ahead of print]

PMID:
25466291
[PubMed - as supplied by publisher]
2.

MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures.

Vazquez M, Nogales-Cadenas R, Arroyo J, Botías P, García R, Carazo JM, Tirado F, Pascual-Montano A, Carmona-Saez P.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W228-32. doi: 10.1093/nar/gkq476. Epub 2010 May 31.

PMID:
20513648
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Ribavirin acts via multiple pathways in inhibition of leukemic cell proliferation.

Kökény S, Papp J, Weber G, Vaszkó T, Carmona-Saez P, Oláh E.

Anticancer Res. 2009 Jun;29(6):1971-80.

PMID:
19528454
[PubMed - indexed for MEDLINE]
Free Article
4.

GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information.

Nogales-Cadenas R, Carmona-Saez P, Vazquez M, Vicente C, Yang X, Tirado F, Carazo JM, Pascual-Montano A.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W317-22. doi: 10.1093/nar/gkp416. Epub 2009 May 22.

PMID:
19465387
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

SENT: semantic features in text.

Vazquez M, Carmona-Saez P, Nogales-Cadenas R, Chagoyen M, Tirado F, Carazo JM, Pascual-Montano A.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W153-9. doi: 10.1093/nar/gkp392. Epub 2009 May 20.

PMID:
19458159
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A free radical-generating system induces the cholesterol biosynthesis pathway: a role in Alzheimer's disease.

Recuero M, Vicente MC, Martínez-García A, Ramos MC, Carmona-Saez P, Sastre I, Aldudo J, Vilella E, Frank A, Bullido MJ, Valdivieso F.

Aging Cell. 2009 Apr;8(2):128-39. doi: 10.1111/j.1474-9726.2009.00457.x. Epub 2009 Feb 23.

PMID:
19239419
[PubMed - indexed for MEDLINE]
Free Article
7.

bioNMF: a web-based tool for nonnegative matrix factorization in biology.

Mejía-Roa E, Carmona-Saez P, Nogales R, Vicente C, Vázquez M, Yang XY, García C, Tirado F, Pascual-Montano A.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W523-8. doi: 10.1093/nar/gkn335. Epub 2008 May 30.

PMID:
18515346
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data.

Abascal F, Carmona-Saez P, Carazo JM, Pascual-Montano A.

Bioinformatics. 2008 May 1;24(9):1208-9. doi: 10.1093/bioinformatics/btn094. Epub 2008 Mar 12.

PMID:
18339638
[PubMed - indexed for MEDLINE]
Free Article
9.

SPACE: an algorithm to predict and quantify alternatively spliced isoforms using microarrays.

Anton MA, Gorostiaga D, Guruceaga E, Segura V, Carmona-Saez P, Pascual-Montano A, Pio R, Montuenga LM, Rubio A.

Genome Biol. 2008;9(2):R46. doi: 10.1186/gb-2008-9-2-r46. Epub 2008 Feb 29.

PMID:
18312629
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists.

Carmona-Saez P, Chagoyen M, Tirado F, Carazo JM, Pascual-Montano A.

Genome Biol. 2007;8(1):R3.

PMID:
17204154
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

bioNMF: a versatile tool for non-negative matrix factorization in biology.

Pascual-Montano A, Carmona-Saez P, Chagoyen M, Tirado F, Carazo JM, Pascual-Marqui RD.

BMC Bioinformatics. 2006 Jul 28;7:366.

PMID:
16875499
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A literature-based similarity metric for biological processes.

Chagoyen M, Carmona-Saez P, Gil C, Carazo JM, Pascual-Montano A.

BMC Bioinformatics. 2006 Jul 26;7:363.

PMID:
16872502
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Transcriptional profiling of MCF7 breast cancer cells in response to 5-Fluorouracil: relationship with cell cycle changes and apoptosis, and identification of novel targets of p53.

Hernández-Vargas H, Ballestar E, Carmona-Saez P, von Kobbe C, Bañón-Rodríguez I, Esteller M, Moreno-Bueno G, Palacios J.

Int J Cancer. 2006 Sep 1;119(5):1164-75.

PMID:
16557594
[PubMed - indexed for MEDLINE]
14.

Biclustering of gene expression data by Non-smooth Non-negative Matrix Factorization.

Carmona-Saez P, Pascual-Marqui RD, Tirado F, Carazo JM, Pascual-Montano A.

BMC Bioinformatics. 2006 Feb 17;7:78.

PMID:
16503973
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Integrated analysis of gene expression by Association Rules Discovery.

Carmona-Saez P, Chagoyen M, Rodriguez A, Trelles O, Carazo JM, Pascual-Montano A.

BMC Bioinformatics. 2006 Feb 7;7:54.

PMID:
16464256
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Discovering semantic features in the literature: a foundation for building functional associations.

Chagoyen M, Carmona-Saez P, Shatkay H, Carazo JM, Pascual-Montano A.

BMC Bioinformatics. 2006 Jan 26;7:41.

PMID:
16438716
[PubMed - indexed for MEDLINE]
Free PMC Article

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