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Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes.

Staton M, Zhebentyayeva T, Olukolu B, Fang GC, Nelson D, Carlson JE, Abbott AG.

BMC Genomics. 2015 Oct 5;16(1):744. doi: 10.1186/s12864-015-1942-1.


Intraspecific variation in stomatal traits, leaf traits and physiology reflects adaptation along aridity gradients in a South African shrub.

Carlson JE, Adams CA, Holsinger KE.

Ann Bot. 2015 Sep 30. pii: mcv146. [Epub ahead of print]


Characterization of the Transcriptome of the Xerophyte Ammopiptanthus mongolicus Leaves under Drought Stress by 454 Pyrosequencing.

Pang T, Guo L, Shim D, Cannon N, Tang S, Chen J, Xia X, Yin W, Carlson JE.

PLoS One. 2015 Aug 27;10(8):e0136495. doi: 10.1371/journal.pone.0136495. eCollection 2015.


Extrapolating from local ecological processes to genus-wide patterns in colour polymorphism in South African Protea.

Carlson JE, Holsinger KE.

Proc Biol Sci. 2015 May 7;282(1806):20150583. doi: 10.1098/rspb.2015.0583.


Functional Traits in Parallel Evolutionary Radiations and Trait-Environment Associations in the Cape Floristic Region of South Africa.

Mitchell N, Moore TE, Mollmann HK, Carlson JE, Mocko K, Martinez-Cabrera H, Adams C, Silander JA Jr, Jones CS, Schlichting CD, Holsinger KE.

Am Nat. 2015 Apr;185(4):525-37. doi: 10.1086/680051. Epub 2015 Feb 5.


Development of genomic microsatellites in Gleditsia triacanthos (Fabaceae) using Illumina sequencing.

Owusu SA, Staton M, Jennings TN, Schlarbaum S, Coggeshall MV, Romero-Severson J, Carlson JE, Gailing O.

Appl Plant Sci. 2013 Nov 28;1(12). pii: apps.1300050. doi: 10.3732/apps.1300050. eCollection 2013 Dec.


The Camelina aquaporin CsPIP2;1 is regulated by phosphorylation at Ser273, but not at Ser277, of the C-terminus and is involved in salt- and drought-stress responses.

Jang HY, Rhee J, Carlson JE, Ahn SJ.

J Plant Physiol. 2014 Sep 15;171(15):1401-12. doi: 10.1016/j.jplph.2014.06.009. Epub 2014 Jul 5.


Genome and secretome analysis of the hemibiotrophic fungal pathogen, Moniliophthora roreri, which causes frosty pod rot disease of cacao: mechanisms of the biotrophic and necrotrophic phases.

Meinhardt LW, Costa GG, Thomazella DP, Teixeira PJ, Carazzolle MF, Schuster SC, Carlson JE, Guiltinan MJ, Mieczkowski P, Farmer A, Ramaraj T, Crozier J, Davis RE, Shao J, Melnick RL, Pereira GA, Bailey BA.

BMC Genomics. 2014 Feb 27;15:164. doi: 10.1186/1471-2164-15-164.


Midgut transcriptome profiling of Anoplophora glabripennis, a lignocellulose degrading cerambycid beetle.

Scully ED, Hoover K, Carlson JE, Tien M, Geib SM.

BMC Genomics. 2013 Dec 4;14:850. doi: 10.1186/1471-2164-14-850.


Metagenomic profiling reveals lignocellulose degrading system in a microbial community associated with a wood-feeding beetle.

Scully ED, Geib SM, Hoover K, Tien M, Tringe SG, Barry KW, Glavina del Rio T, Chovatia M, Herr JR, Carlson JE.

PLoS One. 2013 Sep 4;8(9):e73827. doi: 10.1371/journal.pone.0073827. eCollection 2013.


Wood chemistry analysis and expression profiling of a poplar clone expressing a tyrosine-rich peptide.

Xu Y, Chen CF, Thomas TP, Azadi P, Diehl B, Tsai CJ, Brown N, Carlson JE, Tien M, Liang H.

Plant Cell Rep. 2013 Dec;32(12):1827-41. doi: 10.1007/s00299-013-1496-0. Epub 2013 Sep 7.


Populus euphratica: the transcriptomic response to drought stress.

Tang S, Liang H, Yan D, Zhao Y, Han X, Carlson JE, Xia X, Yin W.

Plant Mol Biol. 2013 Dec;83(6):539-57. doi: 10.1007/s11103-013-0107-3. Epub 2013 Jul 16.


Two aquaporins of Jatropha are regulated differentially during drought stress and subsequent recovery.

Jang HY, Yang SW, Carlson JE, Ku YG, Ahn SJ.

J Plant Physiol. 2013 Jul 15;170(11):1028-38. doi: 10.1016/j.jplph.2013.03.001. Epub 2013 Mar 26.


Cold stress causes rapid but differential changes in properties of plasma membrane H(+)-ATPase of camelina and rapeseed.

Kim HS, Oh JM, Luan S, Carlson JE, Ahn SJ.

J Plant Physiol. 2013 Jun 15;170(9):828-37. doi: 10.1016/j.jplph.2013.01.007. Epub 2013 Feb 8.


Developmental plasticity in Protea as an evolutionary response to environmental clines in the Cape Floristic Region.

Carlson JE, Holsinger KE.

PLoS One. 2012;7(12):e52035. doi: 10.1371/journal.pone.0052035. Epub 2012 Dec 13.


Overexpression of CONSTANS homologs CO1 and CO2 fails to alter normal reproductive onset and fall bud set in woody perennial poplar.

Hsu CY, Adams JP, No K, Liang H, Meilan R, Pechanova O, Barakat A, Carlson JE, Page GP, Yuceer C.

PLoS One. 2012;7(9):e45448. doi: 10.1371/journal.pone.0045448. Epub 2012 Sep 19.


Direct and indirect selection on floral pigmentation by pollinators and seed predators in a color polymorphic South African shrub.

Carlson JE, Holsinger KE.

Oecologia. 2013 Apr;171(4):905-19. doi: 10.1007/s00442-012-2453-2. Epub 2012 Sep 25.


The effect of historical legacy on adaptation: do closely related species respond to the environment in the same way?

Prunier R, Holsinger KE, Carlson JE.

J Evol Biol. 2012 Aug;25(8):1636-49. doi: 10.1111/j.1420-9101.2012.02548.x. Epub 2012 Jun 11.


The mitochondrial genome of Moniliophthora roreri, the frosty pod rot pathogen of cacao.

Costa GG, Cabrera OG, Tiburcio RA, Medrano FJ, Carazzolle MF, Thomazella DP, Schuster SC, Carlson JE, Guiltinan MJ, Bailey BA, Mieczkowski P, Pereira GA, Meinhardt LW.

Fungal Biol. 2012 May;116(5):551-62. doi: 10.1016/j.funbio.2012.01.008. Epub 2012 Feb 15.

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