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The Shepherds' Tale: A Genome-Wide Study across 9 Dog Breeds Implicates Two Loci in the Regulation of Fructosamine Serum Concentration in Belgian Shepherds.

Forsberg SK, Kierczak M, Ljungvall I, Merveille AC, Gouni V, Wiberg M, Lundgren Willesen J, Hanås S, Lequarré AS, Mejer Sørensen L, Tiret L, McEntee K, Seppälä E, Koch J, Battaille G, Lohi H, Fredholm M, Chetboul V, Häggström J, Carlborg Ö, Lindblad-Toh K, Höglund K.

PLoS One. 2015 May 13;10(5):e0123173. doi: 10.1371/journal.pone.0123173. eCollection 2015.


Natural CMT2 variation is associated with genome-wide methylation changes and temperature seasonality.

Shen X, De Jonge J, Forsberg SK, Pettersson ME, Sheng Z, Hennig L, Carlborg Ö.

PLoS Genet. 2014 Dec 11;10(12):e1004842. doi: 10.1371/journal.pgen.1004842. eCollection 2014 Dec.


Capacitating epistasis--detection and role in the genetic architecture of complex traits.

Pettersson ME, Carlborg O.

Methods Mol Biol. 2015;1253:185-96. doi: 10.1007/978-1-4939-2155-3_10.


Genetic influences on brain gene expression in rats selected for tameness and aggression.

Heyne HO, Lautenschläger S, Nelson R, Besnier F, Rotival M, Cagan A, Kozhemyakina R, Plyusnina IZ, Trut L, Carlborg Ö, Petretto E, Kruglyak L, Pääbo S, Schöneberg T, Albert FW.

Genetics. 2014 Nov;198(3):1277-90. doi: 10.1534/genetics.114.168948. Epub 2014 Sep 3.


Variance heterogeneity in Saccharomyces cerevisiae expression data: trans-regulation and epistasis.

Nelson RM, Pettersson ME, Li X, Carlborg Ö.

PLoS One. 2013 Nov 4;8(11):e79507. doi: 10.1371/journal.pone.0079507. eCollection 2013.


Identification of candidate genes and mutations in QTL regions for chicken growth using bioinformatic analysis of NGS and SNP-chip data.

Ahsan M, Li X, Lundberg AE, Kierczak M, Siegel PB, Carlborg O, Marklund S.

Front Genet. 2013 Nov 5;4:226. doi: 10.3389/fgene.2013.00226. eCollection 2013.


Dynamics of adaptive alleles in divergently selected body weight lines of chickens.

Pettersson ME, Johansson AM, Siegel PB, Carlborg O.

G3 (Bethesda). 2013 Dec 9;3(12):2305-12. doi: 10.1534/g3.113.008375.


A century after Fisher: time for a new paradigm in quantitative genetics.

Nelson RM, Pettersson ME, Carlborg Ö.

Trends Genet. 2013 Dec;29(12):669-76. doi: 10.1016/j.tig.2013.09.006. Epub 2013 Oct 23.


MAPfastR: quantitative trait loci mapping in outbred line crosses.

Nelson RM, Nettelblad C, Pettersson ME, Shen X, Crooks L, Besnier F, Alvarez-Castro JM, Rönnegård L, Ek W, Sheng Z, Kierczak M, Holmgren S, Carlborg O.

G3 (Bethesda). 2013 Dec 9;3(12):2147-9. doi: 10.1534/g3.113.008623.


Higher order interactions: detection of epistasis using machine learning and evolutionary computation.

Nelson RM, Kierczak M, Carlborg O.

Methods Mol Biol. 2013;1019:499-518. doi: 10.1007/978-1-62703-447-0_24.


Beware of risk for increased false positive rates in genome-wide association studies for phenotypic variability.

Shen X, Carlborg O.

Front Genet. 2013 May 21;4:93. doi: 10.3389/fgene.2013.00093. eCollection 2013. No abstract available.


Identification of null alleles and deletions from SNP genotypes for an intercross between domestic and wild chickens.

Crooks L, Carlborg Ö, Marklund S, Johansson AM.

G3 (Bethesda). 2013 Aug 7;3(8):1253-60. doi: 10.1534/g3.113.006643.


Genome-wide analysis in German shepherd dogs reveals association of a locus on CFA 27 with atopic dermatitis.

Tengvall K, Kierczak M, Bergvall K, Olsson M, Frankowiack M, Farias FH, Pielberg G, Carlborg Ö, Leeb T, Andersson G, Hammarström L, Hedhammar Å, Lindblad-Toh K.

PLoS Genet. 2013 May;9(5):e1003475. doi: 10.1371/journal.pgen.1003475. Epub 2013 May 9. Erratum in: PLoS Genet. 2013 May;9(5). doi:10.1371/annotation/fd6f4425-3d84-4017-a012-a5df6ddee13a.


PASE: a novel method for functional prediction of amino acid substitutions based on physicochemical properties.

Li X, Kierczak M, Shen X, Ahsan M, Carlborg O, Marklund S.

Front Genet. 2013 Mar 6;4:21. doi: 10.3389/fgene.2013.00021. eCollection 2013.


Genetic dissection of growth traits in a Chinese indigenous × commercial broiler chicken cross.

Sheng Z, Pettersson ME, Hu X, Luo C, Qu H, Shu D, Shen X, Carlborg O, Li N.

BMC Genomics. 2013 Mar 6;14:151. doi: 10.1186/1471-2164-14-151.


Modelling of genetic interactions improves prediction of hybrid patterns--a case study in domestic fowl.

Álvarez-Castro JM, Le Rouzic A, Andersson L, Siegel PB, Carlborg Ö.

Genet Res (Camb). 2012 Oct;94(5):255-66. doi: 10.1017/S001667231200047X.


Selection on variance-controlling genes: adaptability or stability.

Pettersson ME, Nelson RM, Carlborg O.

Evolution. 2012 Dec;66(12):3945-9. doi: 10.1111/j.1558-5646.2012.01753.x. Epub 2012 Aug 24.


Strong signatures of selection in the domestic pig genome.

Rubin CJ, Megens HJ, Martinez Barrio A, Maqbool K, Sayyab S, Schwochow D, Wang C, Carlborg Ö, Jern P, Jørgensen CB, Archibald AL, Fredholm M, Groenen MA, Andersson L.

Proc Natl Acad Sci U S A. 2012 Nov 27;109(48):19529-36. doi: 10.1073/pnas.1217149109. Epub 2012 Nov 14.


Inheritance beyond plain heritability: variance-controlling genes in Arabidopsis thaliana.

Shen X, Pettersson M, Rönnegård L, Carlborg Ö.

PLoS Genet. 2012;8(8):e1002839. doi: 10.1371/journal.pgen.1002839. Epub 2012 Aug 2.

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