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Items: 1 to 20 of 83

1.

A Complex Structural Variation on Chromosome 27 Leads to the Ectopic Expression of HOXB8 and the Muffs and Beard Phenotype in Chickens.

Guo Y, Gu X, Sheng Z, Wang Y, Luo C, Liu R, Qu H, Shu D, Wen J, Crooijmans RP, Carlborg Ö, Zhao Y, Hu X, Li N.

PLoS Genet. 2016 Jun 2;12(6):e1006071. doi: 10.1371/journal.pgen.1006071. eCollection 2016 Jun.

2.

Genetic Regulation of Transcriptional Variation in Natural Arabidopsis thaliana Accessions.

Zan Y, Shen X -, Forsberg S, Carlborg O.

G3 (Bethesda). 2016 May 25. pii: g3.116.030874. doi: 10.1534/g3.116.030874. [Epub ahead of print]

3.

Correction: Genome-Wide Analysis in German Shepherd Dogs Reveals Association of a Locus on CFA 27 with Atopic Dermatitis.

Tengvall K, Kierczak M, Bergvall K, Olsson M, Frankowiack M, Farias FH, Pielberg G, Carlborg Ö, Leeb T, Andersson G, Hammarström L, Hedhammar Å, Lindblad-Toh K.

PLoS Genet. 2015 Dec 11;11(12):e1005740. doi: 10.1371/journal.pgen.1005740. eCollection 2015 Dec. No abstract available.

4.

The Multi-allelic Genetic Architecture of a Variance-Heterogeneity Locus for Molybdenum Concentration in Leaves Acts as a Source of Unexplained Additive Genetic Variance.

Forsberg SK, Andreatta ME, Huang XY, Danku J, Salt DE, Carlborg Ö.

PLoS Genet. 2015 Nov 23;11(11):e1005648. doi: 10.1371/journal.pgen.1005648. eCollection 2015 Nov.

5.

Mitogenomic analysis of a 50-generation chicken pedigree reveals a rapid rate of mitochondrial evolution and evidence for paternal mtDNA inheritance.

Alexander M, Ho SY, Molak M, Barnett R, Carlborg Ö, Dorshorst B, Honaker C, Besnier F, Wahlberg P, Dobney K, Siegel P, Andersson L, Larson G.

Biol Lett. 2015 Oct;11(10). pii: 20150561. doi: 10.1098/rsbl.2015.0561.

6.

Standing genetic variation as a major contributor to adaptation in the Virginia chicken lines selection experiment.

Sheng Z, Pettersson ME, Honaker CF, Siegel PB, Carlborg Ö.

Genome Biol. 2015 Oct 1;16:219. doi: 10.1186/s13059-015-0785-z.

7.

A Genome-Wide Association Analysis Reveals Epistatic Cancellation of Additive Genetic Variance for Root Length in Arabidopsis thaliana.

Lachowiec J, Shen X, Queitsch C, Carlborg Ö.

PLoS Genet. 2015 Sep 23;11(9):e1005541. doi: 10.1371/journal.pgen.1005541. eCollection 2015.

8.

cgmisc: enhanced genome-wide association analyses and visualization.

Kierczak M, Jabłońska J, Forsberg SK, Bianchi M, Tengvall K, Pettersson M, Scholz V, Meadows JR, Jern P, Carlborg Ö, Lindblad-Toh K.

Bioinformatics. 2015 Dec 1;31(23):3830-1. doi: 10.1093/bioinformatics/btv426. Epub 2015 Aug 6.

9.

Reassess the t Test: Interact with All Your Data via ANOVA.

Brady SM, Burow M, Busch W, Carlborg Ö, Denby KJ, Glazebrook J, Hamilton ES, Harmer SL, Haswell ES, Maloof JN, Springer NM, Kliebenstein DJ.

Plant Cell. 2015 Aug;27(8):2088-94. doi: 10.1105/tpc.15.00238. Epub 2015 Jul 28.

PMID:
26220933
10.

Multiple Changes of Gene Expression and Function Reveal Genomic and Phenotypic Complexity in SLE-like Disease.

Wilbe M, Kozyrev SV, Farias FH, Bremer HD, Hedlund A, Pielberg GR, Seppälä EH, Gustafson U, Lohi H, Carlborg Ö, Andersson G, Hansson-Hamlin H, Lindblad-Toh K.

PLoS Genet. 2015 Jun 9;11(6):e1005248. doi: 10.1371/journal.pgen.1005248. eCollection 2015 Jun.

11.

The Shepherds' Tale: A Genome-Wide Study across 9 Dog Breeds Implicates Two Loci in the Regulation of Fructosamine Serum Concentration in Belgian Shepherds.

Forsberg SK, Kierczak M, Ljungvall I, Merveille AC, Gouni V, Wiberg M, Lundgren Willesen J, Hanås S, Lequarré AS, Mejer Sørensen L, Tiret L, McEntee K, Seppälä E, Koch J, Battaille G, Lohi H, Fredholm M, Chetboul V, Häggström J, Carlborg Ö, Lindblad-Toh K, Höglund K.

PLoS One. 2015 May 13;10(5):e0123173. doi: 10.1371/journal.pone.0123173. eCollection 2015.

12.

Natural CMT2 variation is associated with genome-wide methylation changes and temperature seasonality.

Shen X, De Jonge J, Forsberg SK, Pettersson ME, Sheng Z, Hennig L, Carlborg Ö.

PLoS Genet. 2014 Dec 11;10(12):e1004842. doi: 10.1371/journal.pgen.1004842. eCollection 2014 Dec.

13.

Capacitating epistasis--detection and role in the genetic architecture of complex traits.

Pettersson ME, Carlborg O.

Methods Mol Biol. 2015;1253:185-96. doi: 10.1007/978-1-4939-2155-3_10.

PMID:
25403533
14.

Genetic influences on brain gene expression in rats selected for tameness and aggression.

Heyne HO, Lautenschläger S, Nelson R, Besnier F, Rotival M, Cagan A, Kozhemyakina R, Plyusnina IZ, Trut L, Carlborg Ö, Petretto E, Kruglyak L, Pääbo S, Schöneberg T, Albert FW.

Genetics. 2014 Nov;198(3):1277-90. doi: 10.1534/genetics.114.168948. Epub 2014 Sep 3.

15.

Variance heterogeneity in Saccharomyces cerevisiae expression data: trans-regulation and epistasis.

Nelson RM, Pettersson ME, Li X, Carlborg Ö.

PLoS One. 2013 Nov 4;8(11):e79507. doi: 10.1371/journal.pone.0079507. eCollection 2013.

16.

Identification of candidate genes and mutations in QTL regions for chicken growth using bioinformatic analysis of NGS and SNP-chip data.

Ahsan M, Li X, Lundberg AE, Kierczak M, Siegel PB, Carlborg O, Marklund S.

Front Genet. 2013 Nov 5;4:226. doi: 10.3389/fgene.2013.00226. eCollection 2013.

17.

Dynamics of adaptive alleles in divergently selected body weight lines of chickens.

Pettersson ME, Johansson AM, Siegel PB, Carlborg O.

G3 (Bethesda). 2013 Dec 9;3(12):2305-12. doi: 10.1534/g3.113.008375.

18.

A century after Fisher: time for a new paradigm in quantitative genetics.

Nelson RM, Pettersson ME, Carlborg Ö.

Trends Genet. 2013 Dec;29(12):669-76. doi: 10.1016/j.tig.2013.09.006. Epub 2013 Oct 23.

PMID:
24161664
19.

MAPfastR: quantitative trait loci mapping in outbred line crosses.

Nelson RM, Nettelblad C, Pettersson ME, Shen X, Crooks L, Besnier F, Alvarez-Castro JM, Rönnegård L, Ek W, Sheng Z, Kierczak M, Holmgren S, Carlborg O.

G3 (Bethesda). 2013 Dec 9;3(12):2147-9. doi: 10.1534/g3.113.008623.

20.

Higher order interactions: detection of epistasis using machine learning and evolutionary computation.

Nelson RM, Kierczak M, Carlborg O.

Methods Mol Biol. 2013;1019:499-518. doi: 10.1007/978-1-62703-447-0_24.

PMID:
23756908
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