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Results: 1 to 20 of 45

1.

In silico comparative characterization of pharmacogenomic missense variants.

Li B, Seligman C, Thusberg J, Miller JL, Auer J, Whirl-Carrillo M, Capriotti E, Klein TE, Mooney SD.

BMC Genomics. 2014;15 Suppl 4:S4. doi: 10.1186/1471-2164-15-S4-S4. Epub 2014 May 20.

PMID:
25057096
[PubMed - in process]
2.

SNP-SIG 2013: from coding to non-coding - new approaches for genomic variant interpretation.

Bromberg Y, Capriotti E.

BMC Genomics. 2014;15 Suppl 4:S1. doi: 10.1186/1471-2164-15-S4-S1. Epub 2014 May 20. No abstract available.

PMID:
25056427
[PubMed - in process]
3.

SNP-SIG 2013: the state of the art of genomic variant interpretation.

Bromberg Y, Capriotti E.

Bioinformatics. 2014 Jul 11. pii: btu415. [Epub ahead of print]

PMID:
25015991
[PubMed - as supplied by publisher]
4.

SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments.

Tommaso PD, Bussotti G, Kemena C, Capriotti E, Chatzou M, Prieto P, Notredame C.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W356-60. doi: 10.1093/nar/gku459. Epub 2014 Jun 27.

PMID:
24972831
[PubMed - in process]
Free Article
5.

Computational and theoretical methods for protein folding.

Compiani M, Capriotti E.

Biochemistry. 2013 Dec 3;52(48):8601-24. doi: 10.1021/bi4001529. Epub 2013 Nov 21. Review.

PMID:
24187909
[PubMed - indexed for MEDLINE]
6.

WebRASP: a server for computing energy scores to assess the accuracy and stability of RNA 3D structures.

Norambuena T, Cares JF, Capriotti E, Melo F.

Bioinformatics. 2013 Oct 15;29(20):2649-50. doi: 10.1093/bioinformatics/btt441. Epub 2013 Aug 7.

PMID:
23929030
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Collective judgment predicts disease-associated single nucleotide variants.

Capriotti E, Altman RB, Bromberg Y.

BMC Genomics. 2013;14 Suppl 3:S2. doi: 10.1186/1471-2164-14-S3-S2. Epub 2013 May 28.

PMID:
23819846
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Thoughts from SNP-SIG 2012: future challenges in the annotation of genetic variations.

Bromberg Y, Capriotti E.

BMC Genomics. 2013;14 Suppl 3:S1. doi: 10.1186/1471-2164-14-S3-S1. Epub 2013 May 28. No abstract available.

PMID:
23819751
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

WS-SNPs&GO: a web server for predicting the deleterious effect of human protein variants using functional annotation.

Capriotti E, Calabrese R, Fariselli P, Martelli PL, Altman RB, Casadio R.

BMC Genomics. 2013;14 Suppl 3:S6. doi: 10.1186/1471-2164-14-S3-S6. Epub 2013 May 28.

PMID:
23819482
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package.

Kemena C, Bussotti G, Capriotti E, Marti-Renom MA, Notredame C.

Bioinformatics. 2013 May 1;29(9):1112-9. doi: 10.1093/bioinformatics/btt096. Epub 2013 Feb 28.

PMID:
23449094
[PubMed - indexed for MEDLINE]
Free Article
11.

SNP-SIG Meeting 2011: identification and annotation of SNPs in the context of structure, function, and disease.

Bromberg Y, Capriotti E.

BMC Genomics. 2012 Jun 18;13 Suppl 4:S1. doi: 10.1186/1471-2164-13-S4-S1. No abstract available.

PMID:
22759647
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Bioinformatics and variability in drug response: a protein structural perspective.

Lahti JL, Tang GW, Capriotti E, Liu T, Altman RB.

J R Soc Interface. 2012 Jul 7;9(72):1409-37. doi: 10.1098/rsif.2011.0843. Epub 2012 May 2. Review.

PMID:
22552919
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Bioinformatics for personal genome interpretation.

Capriotti E, Nehrt NL, Kann MG, Bromberg Y.

Brief Bioinform. 2012 Jul;13(4):495-512. Epub 2012 Jan 13. Review.

PMID:
22247263
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Improving the prediction of disease-related variants using protein three-dimensional structure.

Capriotti E, Altman RB.

BMC Bioinformatics. 2011;12 Suppl 4:S3. doi: 10.1186/1471-2105-12-S4-S3. Epub 2011 Jul 5.

PMID:
21992054
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Phased whole-genome genetic risk in a family quartet using a major allele reference sequence.

Dewey FE, Chen R, Cordero SP, Ormond KE, Caleshu C, Karczewski KJ, Whirl-Carrillo M, Wheeler MT, Dudley JT, Byrnes JK, Cornejo OE, Knowles JW, Woon M, Sangkuhl K, Gong L, Thorn CF, Hebert JM, Capriotti E, David SP, Pavlovic A, West A, Thakuria JV, Ball MP, Zaranek AW, Rehm HL, Church GM, West JS, Bustamante CD, Snyder M, Altman RB, Klein TE, Butte AJ, Ashley EA.

PLoS Genet. 2011 Sep;7(9):e1002280. doi: 10.1371/journal.pgen.1002280. Epub 2011 Sep 15.

PMID:
21935354
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A new disease-specific machine learning approach for the prediction of cancer-causing missense variants.

Capriotti E, Altman RB.

Genomics. 2011 Oct;98(4):310-7. doi: 10.1016/j.ygeno.2011.06.010. Epub 2011 Jul 7.

PMID:
21763417
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Bioinformatics challenges for personalized medicine.

Fernald GH, Capriotti E, Daneshjou R, Karczewski KJ, Altman RB.

Bioinformatics. 2011 Jul 1;27(13):1741-8. doi: 10.1093/bioinformatics/btr295. Epub 2011 May 19. Erratum in: Bioinformatics. 2011 Aug 15;27(16):2323.

PMID:
21596790
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Comparative modeling: the state of the art and protein drug target structure prediction.

Liu T, Tang GW, Capriotti E.

Comb Chem High Throughput Screen. 2011 Jul;14(6):532-47. Review.

PMID:
21521153
[PubMed - indexed for MEDLINE]
19.

All-atom knowledge-based potential for RNA structure prediction and assessment.

Capriotti E, Norambuena T, Marti-Renom MA, Melo F.

Bioinformatics. 2011 Apr 15;27(8):1086-93. doi: 10.1093/bioinformatics/btr093. Epub 2011 Feb 23.

PMID:
21349865
[PubMed - indexed for MEDLINE]
Free Article
20.

The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules.

Baù D, Sanyal A, Lajoie BR, Capriotti E, Byron M, Lawrence JB, Dekker J, Marti-Renom MA.

Nat Struct Mol Biol. 2011 Jan;18(1):107-14. doi: 10.1038/nsmb.1936. Epub 2010 Dec 5.

PMID:
21131981
[PubMed - indexed for MEDLINE]
Free PMC Article

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