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Results: 1 to 20 of 25

1.

Two accurate sequence, structure, and phylogenetic template-based RNA alignment systems.

Shang L, Gardner DP, Xu W, Cannone JJ, Miranker DP, Ozer S, Gutell RR.

BMC Syst Biol. 2013;7 Suppl 4:S13. doi: 10.1186/1752-0509-7-S4-S13. Epub 2013 Oct 23.

PMID:
24565058
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Specificity between lactobacilli and hymenopteran hosts is the exception rather than the rule.

McFrederick QS, Cannone JJ, Gutell RR, Kellner K, Plowes RM, Mueller UG.

Appl Environ Microbiol. 2013 Mar;79(6):1803-12. doi: 10.1128/AEM.03681-12. Epub 2013 Jan 4.

PMID:
23291551
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

An Accurate Scalable Template-based Alignment Algorithm.

Gardner DP, Xu W, Miranker DP, Ozer S, Cannone JJ, Gutell RR.

Proceedings (IEEE Int Conf Bioinformatics Biomed). 2012 Dec 31;2012:1-7.

PMID:
24772376
[PubMed]
Free PMC Article
4.

The fragmented mitochondrial ribosomal RNAs of Plasmodium falciparum.

Feagin JE, Harrell MI, Lee JC, Coe KJ, Sands BH, Cannone JJ, Tami G, Schnare MN, Gutell RR.

PLoS One. 2012;7(6):e38320. doi: 10.1371/journal.pone.0038320. Epub 2012 Jun 22.

PMID:
22761677
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

RNA2DMap: A Visual Exploration Tool of the Information in RNA's Higher-Order Structure.

Xu W, Wongsa A, Lee J, Shang L, Cannone JJ, Gutell RR.

Proceedings (IEEE Int Conf Bioinformatics Biomed). 2011:613-617.

PMID:
22983261
[PubMed]
Free PMC Article
6.

Fragmentation of the large subunit ribosomal RNA gene in oyster mitochondrial genomes.

Milbury CA, Lee JC, Cannone JJ, Gaffney PM, Gutell RR.

BMC Genomics. 2010 Sep 2;11:485. doi: 10.1186/1471-2164-11-485.

PMID:
20813041
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The limits of nuclear encoded SSU rDNA for resolving the diatom phylogeny.

Theriot EC, Cannone JJ, Gutell RR, Alverson AJ.

Eur J Phycol. 2009 Aug 1;44(3):277-290.

PMID:
20224747
[PubMed]
Free PMC Article
8.

Monophyly of terrestrial adephagan beetles as indicated by three nuclear genes (Coleoptera: Carabidae and Trachypachidae).

Maddison DR, Moore W, Baker MD, Ellis TM, Ober KA, Cannone JJ, Gutell RR.

Zool Scr. 2009;38(1):43-62.

PMID:
19789725
[PubMed]
Free PMC Article
9.

Structure of the mammalian 80S ribosome at 8.7 A resolution.

Chandramouli P, Topf M, Ménétret JF, Eswar N, Cannone JJ, Gutell RR, Sali A, Akey CW.

Structure. 2008 Apr;16(4):535-48. doi: 10.1016/j.str.2008.01.007.

PMID:
18400176
[PubMed - indexed for MEDLINE]
Free PMC Article
10.
11.

Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction.

Doshi KJ, Cannone JJ, Cobaugh CW, Gutell RR.

BMC Bioinformatics. 2004 Aug 5;5:105.

PMID:
15296519
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

ITS secondary structure derived from comparative analysis: implications for sequence alignment and phylogeny of the Asteraceae.

Goertzen LR, Cannone JJ, Gutell RR, Jansen RK.

Mol Phylogenet Evol. 2003 Nov;29(2):216-34.

PMID:
13678678
[PubMed - indexed for MEDLINE]
13.

The exon context and distribution of Euascomycetes rRNA spliceosomal introns.

Bhattacharya D, Simon D, Huang J, Cannone JJ, Gutell RR.

BMC Evol Biol. 2003 Apr 25;3:7. Epub 2003 Apr 25.

PMID:
12716459
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The lonepair triloop: a new motif in RNA structure.

Lee JC, Cannone JJ, Gutell RR.

J Mol Biol. 2003 Jan 3;325(1):65-83.

PMID:
12473452
[PubMed - indexed for MEDLINE]
15.

Modeling a minimal ribosome based on comparative sequence analysis.

Mears JA, Cannone JJ, Stagg SM, Gutell RR, Agrawal RK, Harvey SC.

J Mol Biol. 2002 Aug 9;321(2):215-34.

PMID:
12144780
[PubMed - indexed for MEDLINE]
16.

The accuracy of ribosomal RNA comparative structure models.

Gutell RR, Lee JC, Cannone JJ.

Curr Opin Struct Biol. 2002 Jun;12(3):301-10. Review.

PMID:
12127448
[PubMed - indexed for MEDLINE]
17.

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs.

Cannone JJ, Subramanian S, Schnare MN, Collett JR, D'Souza LM, Du Y, Feng B, Lin N, Madabusi LV, Müller KM, Pande N, Shang Z, Yu N, Gutell RR.

BMC Bioinformatics. 2002;3:2. Epub 2002 Jan 17. Erratum in: BMC Bioinformatics. 2002 Jul;3(1):15.

PMID:
11869452
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Group I intron lateral transfer between red and brown algal ribosomal RNA.

Bhattacarya D, Cannone JJ, Gutell RR.

Curr Genet. 2001 Aug;40(1):82-90.

PMID:
11570520
[PubMed - indexed for MEDLINE]
19.

Accelerated evolution of functional plastid rRNA and elongation factor genes due to reduced protein synthetic load after the loss of photosynthesis in the chlorophyte alga Polytoma.

Vernon D, Gutell RR, Cannone JJ, Rumpf RW, Birky CW Jr.

Mol Biol Evol. 2001 Sep;18(9):1810-22.

PMID:
11504860
[PubMed - indexed for MEDLINE]
Free Article
20.

A structural and phylogenetic analysis of the group IC1 introns in the order Bangiales (Rhodophyta).

Müller KM, Cannone JJ, Gutell RR, Sheath RG.

Mol Biol Evol. 2001 Sep;18(9):1654-67.

PMID:
11504846
[PubMed - indexed for MEDLINE]
Free Article

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