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Results: 1 to 20 of 46

1.

Whole-genome scans provide evidence of adaptive evolution in Malawian Plasmodium falciparum isolates.

Ocholla H, Preston MD, Mipando M, Jensen AT, Campino S, MacInnis B, Alcock D, Terlouw A, Zongo I, Oudraogo JB, Djimde AA, Assefa S, Doumbo OK, Borrmann S, Nzila A, Marsh K, Fairhurst RM, Nosten F, Anderson TJ, Kwiatkowski DP, Craig A, Clark TG, Montgomery J.

J Infect Dis. 2014 Jun 19. pii: jiu349. [Epub ahead of print]

PMID:
24948693
[PubMed - as supplied by publisher]
2.

A barcode of organellar genome polymorphisms identifies the geographic origin of Plasmodium falciparum strains.

Preston MD, Campino S, Assefa SA, Echeverry DF, Ocholla H, Amambua-Ngwa A, Stewart LB, Conway DJ, Borrmann S, Michon P, Zongo I, Ouédraogo JB, Djimde AA, Doumbo OK, Nosten F, Pain A, Bousema T, Drakeley CJ, Fairhurst RM, Sutherland CJ, Roper C, Clark TG.

Nat Commun. 2014 Jun 13;5:4052. doi: 10.1038/ncomms5052.

PMID:
24923250
[PubMed - in process]
3.

A transcriptional switch underlies commitment to sexual development in malaria parasites.

Kafsack BF, Rovira-Graells N, Clark TG, Bancells C, Crowley VM, Campino SG, Williams AE, Drought LG, Kwiatkowski DP, Baker DA, Cortés A, Llinás M.

Nature. 2014 Mar 13;507(7491):248-52. doi: 10.1038/nature12920. Epub 2014 Feb 23.

PMID:
24572369
[PubMed - indexed for MEDLINE]
4.

estMOI: estimating multiplicity of infection using parasite deep sequencing data.

Assefa SA, Preston MD, Campino S, Ocholla H, Sutherland CJ, Clark TG.

Bioinformatics. 2014 May 1;30(9):1292-4. doi: 10.1093/bioinformatics/btu005. Epub 2014 Jan 17.

PMID:
24443379
[PubMed - in process]
Free PMC Article
5.

Genome-wide screen identifies new candidate genes associated with artemisinin susceptibility in Plasmodium falciparum in Kenya.

Borrmann S, Straimer J, Mwai L, Abdi A, Rippert A, Okombo J, Muriithi S, Sasi P, Kortok MM, Lowe B, Campino S, Assefa S, Auburn S, Manske M, Maslen G, Peshu N, Kwiatkowski DP, Marsh K, Nzila A, Clark TG.

Sci Rep. 2013 Nov 25;3:3318. doi: 10.1038/srep03318.

PMID:
24270944
[PubMed - in process]
Free PMC Article
6.

Fc gamma receptor IIa-H131R polymorphism and malaria susceptibility in sympatric ethnic groups, Fulani and Dogon of Mali.

Maiga B, Dolo A, Touré O, Dara V, Tapily A, Campino S, Sepulveda N, Corran P, Rockett K, Clark TG, Blomberg MT, Doumbo OK.

Scand J Immunol. 2014 Jan;79(1):43-50. doi: 10.1111/sji.12122.

PMID:
24117665
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Human candidate polymorphisms in sympatric ethnic groups differing in malaria susceptibility in Mali.

Maiga B, Dolo A, Touré O, Dara V, Tapily A, Campino S, Sepulveda N, Risley P, Silva N, Corran P, Rockett KA, Kwiatkowski D; MalariaGEN Consortium, Clark TG, Troye-Blomberg M, Doumbo OK.

PLoS One. 2013 Oct 2;8(10):e75675. doi: 10.1371/journal.pone.0075675. eCollection 2013.

PMID:
24098393
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia.

Miotto O, Almagro-Garcia J, Manske M, Macinnis B, Campino S, Rockett KA, Amaratunga C, Lim P, Suon S, Sreng S, Anderson JM, Duong S, Nguon C, Chuor CM, Saunders D, Se Y, Lon C, Fukuda MM, Amenga-Etego L, Hodgson AV, Asoala V, Imwong M, Takala-Harrison S, Nosten F, Su XZ, Ringwald P, Ariey F, Dolecek C, Hien TT, Boni MF, Thai CQ, Amambua-Ngwa A, Conway DJ, Djimdé AA, Doumbo OK, Zongo I, Ouedraogo JB, Alcock D, Drury E, Auburn S, Koch O, Sanders M, Hubbart C, Maslen G, Ruano-Rubio V, Jyothi D, Miles A, O'Brien J, Gamble C, Oyola SO, Rayner JC, Newbold CI, Berriman M, Spencer CC, McVean G, Day NP, White NJ, Bethell D, Dondorp AM, Plowe CV, Fairhurst RM, Kwiatkowski DP.

Nat Genet. 2013 Jun;45(6):648-55. doi: 10.1038/ng.2624. Epub 2013 Apr 28.

PMID:
23624527
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data.

Sepúlveda N, Campino SG, Assefa SA, Sutherland CJ, Pain A, Clark TG.

BMC Genomics. 2013 Feb 26;14:128. doi: 10.1186/1471-2164-14-128.

PMID:
23442253
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Effective preparation of Plasmodium vivax field isolates for high-throughput whole genome sequencing.

Auburn S, Marfurt J, Maslen G, Campino S, Ruano Rubio V, Manske M, Machunter B, Kenangalem E, Noviyanti R, Trianty L, Sebayang B, Wirjanata G, Sriprawat K, Alcock D, Macinnis B, Miotto O, Clark TG, Russell B, Anstey NM, Nosten F, Kwiatkowski DP, Price RN.

PLoS One. 2013;8(1):e53160. doi: 10.1371/journal.pone.0053160. Epub 2013 Jan 4.

PMID:
23308154
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia.

Takala-Harrison S, Clark TG, Jacob CG, Cummings MP, Miotto O, Dondorp AM, Fukuda MM, Nosten F, Noedl H, Imwong M, Bethell D, Se Y, Lon C, Tyner SD, Saunders DL, Socheat D, Ariey F, Phyo AP, Starzengruber P, Fuehrer HP, Swoboda P, Stepniewska K, Flegg J, Arze C, Cerqueira GC, Silva JC, Ricklefs SM, Porcella SF, Stephens RM, Adams M, Kenefic LJ, Campino S, Auburn S, MacInnis B, Kwiatkowski DP, Su XZ, White NJ, Ringwald P, Plowe CV.

Proc Natl Acad Sci U S A. 2013 Jan 2;110(1):240-5. doi: 10.1073/pnas.1211205110. Epub 2012 Dec 17.

PMID:
23248304
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Candidate human genetic polymorphisms and severe malaria in a Tanzanian population.

Manjurano A, Clark TG, Nadjm B, Mtove G, Wangai H, Sepulveda N, Campino SG, Maxwell C, Olomi R, Rockett KR, Jeffreys A; MalariaGen Consortium, Riley EM, Reyburn H, Drakeley C.

PLoS One. 2012;7(10):e47463. doi: 10.1371/journal.pone.0047463. Epub 2012 Oct 29.

PMID:
23144702
[PubMed - in process]
Free PMC Article
13.

Population genomic scan for candidate signatures of balancing selection to guide antigen characterization in malaria parasites.

Amambua-Ngwa A, Tetteh KK, Manske M, Gomez-Escobar N, Stewart LB, Deerhake ME, Cheeseman IH, Newbold CI, Holder AA, Knuepfer E, Janha O, Jallow M, Campino S, Macinnis B, Kwiatkowski DP, Conway DJ.

PLoS Genet. 2012;8(11):e1002992. doi: 10.1371/journal.pgen.1002992. Epub 2012 Nov 1.

PMID:
23133397
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

VarB: a variation browsing and analysis tool for variants derived from next-generation sequencing data.

Preston MD, Manske M, Horner N, Assefa S, Campino S, Auburn S, Zongo I, Ouedraogo JB, Nosten F, Anderson T, Clark TG.

Bioinformatics. 2012 Nov 15;28(22):2983-5. doi: 10.1093/bioinformatics/bts557. Epub 2012 Sep 13.

PMID:
22976080
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Candidate polymorphisms and severe malaria in a Malian population.

Toure O, Konate S, Sissoko S, Niangaly A, Barry A, Sall AH, Diarra E, Poudiougou B, Sepulveda N, Campino S, Rockett KA, Clark TG, Thera MA, Doumbo O; Collaboration with The MalariaGEN Consortium.

PLoS One. 2012;7(9):e43987. doi: 10.1371/journal.pone.0043987. Epub 2012 Sep 5.

PMID:
22957039
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing.

Manske M, Miotto O, Campino S, Auburn S, Almagro-Garcia J, Maslen G, O'Brien J, Djimde A, Doumbo O, Zongo I, Ouedraogo JB, Michon P, Mueller I, Siba P, Nzila A, Borrmann S, Kiara SM, Marsh K, Jiang H, Su XZ, Amaratunga C, Fairhurst R, Socheat D, Nosten F, Imwong M, White NJ, Sanders M, Anastasi E, Alcock D, Drury E, Oyola S, Quail MA, Turner DJ, Ruano-Rubio V, Jyothi D, Amenga-Etego L, Hubbart C, Jeffreys A, Rowlands K, Sutherland C, Roper C, Mangano V, Modiano D, Tan JC, Ferdig MT, Amambua-Ngwa A, Conway DJ, Takala-Harrison S, Plowe CV, Rayner JC, Rockett KA, Clark TG, Newbold CI, Berriman M, MacInnis B, Kwiatkowski DP.

Nature. 2012 Jul 19;487(7407):375-9. doi: 10.1038/nature11174.

PMID:
22722859
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Investigation of host candidate malaria-associated risk/protective SNPs in a Brazilian Amazonian population.

da Silva Santos S, Clark TG, Campino S, Suarez-Mutis MC, Rockett KA, Kwiatkowski DP, Fernandes O.

PLoS One. 2012;7(5):e36692. doi: 10.1371/journal.pone.0036692. Epub 2012 May 16.

PMID:
22615793
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Characterization of within-host Plasmodium falciparum diversity using next-generation sequence data.

Auburn S, Campino S, Miotto O, Djimde AA, Zongo I, Manske M, Maslen G, Mangano V, Alcock D, MacInnis B, Rockett KA, Clark TG, Doumbo OK, Ouédraogo JB, Kwiatkowski DP.

PLoS One. 2012;7(2):e32891. doi: 10.1371/journal.pone.0032891. Epub 2012 Feb 29.

PMID:
22393456
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Using CF11 cellulose columns to inexpensively and effectively remove human DNA from Plasmodium falciparum-infected whole blood samples.

Venkatesan M, Amaratunga C, Campino S, Auburn S, Koch O, Lim P, Uk S, Socheat D, Kwiatkowski DP, Fairhurst RM, Plowe CV.

Malar J. 2012 Feb 10;11:41. doi: 10.1186/1475-2875-11-41.

PMID:
22321373
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Optimizing Illumina next-generation sequencing library preparation for extremely AT-biased genomes.

Oyola SO, Otto TD, Gu Y, Maslen G, Manske M, Campino S, Turner DJ, Macinnis B, Kwiatkowski DP, Swerdlow HP, Quail MA.

BMC Genomics. 2012 Jan 3;13:1. doi: 10.1186/1471-2164-13-1.

PMID:
22214261
[PubMed - indexed for MEDLINE]
Free PMC Article

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