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Results: 1 to 20 of 165

1.

Gene expression changes consistent with neuroAIDS and impaired working memory in HIV-1 transgenic rats.

Repunte-Canonigo V, Lefebvre C, George O, Kawamura T, Morales M, Koob G, Califano A, Masliah E, Sanna PP.

Mol Neurodegener. 2014 Jul 1;9(1):26. [Epub ahead of print]

PMID:
24980976
[PubMed - as supplied by publisher]
Free Article
2.

Cross-species regulatory network analysis identifies a synergistic interaction between FOXM1 and CENPF that drives prostate cancer malignancy.

Aytes A, Mitrofanova A, Lefebvre C, Alvarez MJ, Castillo-Martin M, Zheng T, Eastham JA, Gopalan A, Pienta KJ, Shen MM, Califano A, Abate-Shen C.

Cancer Cell. 2014 May 12;25(5):638-51. doi: 10.1016/j.ccr.2014.03.017.

PMID:
24823640
[PubMed - indexed for MEDLINE]
3.

RECOMB/ISCB systems biology, regulatory genomics, and DREAM 2013 special issue.

Califano A, Kellis M, Stolovitzky G.

J Comput Biol. 2014 May;21(5):371-2. doi: 10.1089/cmb.2014.009p. No abstract available.

PMID:
24784777
[PubMed - in process]
4.

Convection-enhanced delivery of etoposide is effective against murine proneural glioblastoma.

Sonabend AM, Carminucci AS, Amendolara B, Bansal M, Leung R, Lei L, Realubit R, Li H, Karan C, Yun J, Showers C, Rothcock R, O J, Califano A, Canoll P, Bruce JN.

Neuro Oncol. 2014 Mar 16. [Epub ahead of print]

PMID:
24637229
[PubMed - as supplied by publisher]
5.

The miR-424(322)/503 cluster orchestrates remodeling of the epithelium in the involuting mammary gland.

Llobet-Navas D, Rodríguez-Barrueco R, Castro V, Ugalde AP, Sumazin P, Jacob-Sendler D, Demircan B, Castillo-Martín M, Putcha P, Marshall N, Villagrasa P, Chan J, Sanchez-Garcia F, Pe'er D, Rabadán R, Iavarone A, Cordón-Cardó C, Califano A, López-Otín C, Ezhkova E, Silva JM.

Genes Dev. 2014 Apr 1;28(7):765-82. doi: 10.1101/gad.237404.114. Epub 2014 Mar 17.

PMID:
24636986
[PubMed - indexed for MEDLINE]
6.

hARACNe: improving the accuracy of regulatory model reverse engineering via higher-order data processing inequality tests.

Jang IS, Margolin A, Califano A.

Interface Focus. 2013 Aug 6;3(4):20130011. doi: 10.1098/rsfs.2013.0011.

PMID:
24511376
[PubMed]
Free PMC Article
7.

ZFHX4 interacts with the NuRD core member CHD4 and regulates the glioblastoma tumor-initiating cell state.

Chudnovsky Y, Kim D, Zheng S, Whyte WA, Bansal M, Bray MA, Gopal S, Theisen MA, Bilodeau S, Thiru P, Muffat J, Yilmaz OH, Mitalipova M, Woolard K, Lee J, Nishimura R, Sakata N, Fine HA, Carpenter AE, Silver SJ, Verhaak RG, Califano A, Young RA, Ligon KL, Mellinghoff IK, Root DE, Sabatini DM, Hahn WC, Chheda MG.

Cell Rep. 2014 Jan 30;6(2):313-24. doi: 10.1016/j.celrep.2013.12.032. Epub 2014 Jan 16.

PMID:
24440720
[PubMed - in process]
Free Article
8.

The transcriptional regulatory network of proneural glioma determines the genetic alterations selected during tumor progression.

Sonabend AM, Bansal M, Guarnieri P, Lei L, Amendolara B, Soderquist C, Leung R, Yun J, Kennedy B, Sisti J, Bruce S, Bruce R, Shakya R, Ludwig T, Rosenfeld S, Sims PA, Bruce JN, Califano A, Canoll P.

Cancer Res. 2014 Mar 1;74(5):1440-51. doi: 10.1158/0008-5472.CAN-13-2150. Epub 2014 Jan 3.

PMID:
24390738
[PubMed - indexed for MEDLINE]
9.

Low-fat meat sausages with fish oil: optimization of milk proteins and carrageenan contents using response surface methodology.

Marchetti L, Andrés SC, Califano AN.

Meat Sci. 2014 Mar;96(3):1297-303. doi: 10.1016/j.meatsci.2013.11.004. Epub 2013 Nov 10.

PMID:
24342180
[PubMed - in process]
10.

Direct reversal of glucocorticoid resistance by AKT inhibition in acute lymphoblastic leukemia.

Piovan E, Yu J, Tosello V, Herranz D, Ambesi-Impiombato A, Da Silva AC, Sanchez-Martin M, Perez-Garcia A, Rigo I, Castillo M, Indraccolo S, Cross JR, de Stanchina E, Paietta E, Racevskis J, Rowe JM, Tallman MS, Basso G, Meijerink JP, Cordon-Cardo C, Califano A, Ferrando AA.

Cancer Cell. 2013 Dec 9;24(6):766-76. doi: 10.1016/j.ccr.2013.10.022. Epub 2013 Nov 27.

PMID:
24291004
[PubMed - indexed for MEDLINE]
11.

A molecular signature predictive of indolent prostate cancer.

Irshad S, Bansal M, Castillo-Martin M, Zheng T, Aytes A, Wenske S, Le Magnen C, Guarnieri P, Sumazin P, Benson MC, Shen MM, Califano A, Abate-Shen C.

Sci Transl Med. 2013 Sep 11;5(202):202ra122. doi: 10.1126/scitranslmed.3006408. Erratum in: Sci Transl Med. 2013 Sep 18;5(203):203er9.

PMID:
24027026
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

MEF2B mutations lead to deregulated expression of the oncogene BCL6 in diffuse large B cell lymphoma.

Ying CY, Dominguez-Sola D, Fabi M, Lorenz IC, Hussein S, Bansal M, Califano A, Pasqualucci L, Basso K, Dalla-Favera R.

Nat Immunol. 2013 Oct;14(10):1084-92. doi: 10.1038/ni.2688. Epub 2013 Aug 25.

PMID:
23974956
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

ETV4 promotes metastasis in response to activation of PI3-kinase and Ras signaling in a mouse model of advanced prostate cancer.

Aytes A, Mitrofanova A, Kinkade CW, Lefebvre C, Lei M, Phelan V, LeKaye HC, Koutcher JA, Cardiff RD, Califano A, Shen MM, Abate-Shen C.

Proc Natl Acad Sci U S A. 2013 Sep 10;110(37):E3506-15. doi: 10.1073/pnas.1303558110. Epub 2013 Aug 5.

PMID:
23918374
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Hypothalamic proteoglycan syndecan-3 is a novel cocaine addiction resilience factor.

Chen J, Repunte-Canonigo V, Kawamura T, Lefebvre C, Shin W, Howell LL, Hemby SE, Harvey BK, Califano A, Morales M, Koob GF, Sanna PP.

Nat Commun. 2013;4:1955. doi: 10.1038/ncomms2955.

PMID:
23736082
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Improving breast cancer survival analysis through competition-based multidimensional modeling.

Bilal E, Dutkowski J, Guinney J, Jang IS, Logsdon BA, Pandey G, Sauerwine BA, Shimoni Y, Moen Vollan HK, Mecham BH, Rueda OM, Tost J, Curtis C, Alvarez MJ, Kristensen VN, Aparicio S, Børresen-Dale AL, Caldas C, Califano A, Friend SH, Ideker T, Schadt EE, Stolovitzky GA, Margolin AA.

PLoS Comput Biol. 2013;9(5):e1003047. doi: 10.1371/journal.pcbi.1003047. Epub 2013 May 9.

PMID:
23671412
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Preface: RECOMB systems biology, regulatory genomics, and DREAM 2012 special issue.

Califano A, Kellis M, Stolovitzky G.

J Comput Biol. 2013 May;20(5):373-4. doi: 10.1089/cmb.2013.008p. No abstract available.

PMID:
23641866
[PubMed - indexed for MEDLINE]
17.

Survival factor NFIL3 restricts FOXO-induced gene expression in cancer.

Keniry M, Pires MM, Mense S, Lefebvre C, Gan B, Justiano K, Lau YK, Hopkins B, Hodakoski C, Koujak S, Toole J, Fenton F, Calahan A, Califano A, DePinho RA, Maurer M, Parsons R.

Genes Dev. 2013 Apr 15;27(8):916-27. doi: 10.1101/gad.214049.113.

PMID:
23630076
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Lineage analysis of basal epithelial cells reveals their unexpected plasticity and supports a cell-of-origin model for prostate cancer heterogeneity.

Wang ZA, Mitrofanova A, Bergren SK, Abate-Shen C, Cardiff RD, Califano A, Shen MM.

Nat Cell Biol. 2013 Mar;15(3):274-83. doi: 10.1038/ncb2697. Epub 2013 Feb 24.

PMID:
23434823
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Pooled shRNA screenings: computational analysis.

Yu J, Putcha P, Califano A, Silva JM.

Methods Mol Biol. 2013;980:371-84. doi: 10.1007/978-1-62703-287-2_22.

PMID:
23359167
[PubMed - indexed for MEDLINE]
20.

tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma.

Maute RL, Schneider C, Sumazin P, Holmes A, Califano A, Basso K, Dalla-Favera R.

Proc Natl Acad Sci U S A. 2013 Jan 22;110(4):1404-9. doi: 10.1073/pnas.1206761110. Epub 2013 Jan 7.

PMID:
23297232
[PubMed - indexed for MEDLINE]
Free PMC Article

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