Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 188

1.

Inhibition of the autocrine IL-6-JAK2-STAT3-calprotectin axis as targeted therapy for HR-/HER2+ breast cancers.

Rodriguez-Barrueco R, Yu J, Saucedo-Cuevas LP, Olivan M, Llobet-Navas D, Putcha P, Castro V, Murga-Penas EM, Collazo-Lorduy A, Castillo-Martin M, Alvarez M, Cordon-Cardo C, Kalinsky K, Maurer M, Califano A, Silva JM.

Genes Dev. 2015 Jul 30. [Epub ahead of print]

PMID:
26227964
2.

Identification of neurodegenerative factors using translatome-regulatory network analysis.

Brichta L, Shin W, Jackson-Lewis V, Blesa J, Yap EL, Walker Z, Zhang J, Roussarie JP, Alvarez MJ, Califano A, Przedborski S, Greengard P.

Nat Neurosci. 2015 Jul 27. doi: 10.1038/nn.4070. [Epub ahead of print]

PMID:
26214373
3.

Elucidating Compound Mechanism of Action by Network Perturbation Analysis.

Woo JH, Shimoni Y, Yang WS, Subramaniam P, Iyer A, Nicoletti P, Rodríguez Martínez M, López G, Mattioli M, Realubit R, Karan C, Stockwell BR, Bansal M, Califano A.

Cell. 2015 Jul 16;162(2):441-51. doi: 10.1016/j.cell.2015.05.056.

PMID:
26186195
4.

The Regulatory Machinery of Neurodegeneration in In Vitro Models of Amyotrophic Lateral Sclerosis.

Ikiz B, Alvarez MJ, Ré DB, Le Verche V, Politi K, Lotti F, Phani S, Pradhan R, Yu C, Croft GF, Jacquier A, Henderson CE, Califano A, Przedborski S.

Cell Rep. 2015 Jul 14;12(2):335-45. doi: 10.1016/j.celrep.2015.06.019. Epub 2015 Jul 2.

5.

ABC Transporters and the Proteasome Complex Are Implicated in Susceptibility to Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis across Multiple Drugs.

Nicoletti P, Bansal M, Lefebvre C, Guarnieri P, Shen Y, Pe'er I, Califano A, Floratos A.

PLoS One. 2015 Jun 25;10(6):e0131038. doi: 10.1371/journal.pone.0131038. eCollection 2015.

6.

Direct ChIP-Seq significance analysis improves target prediction.

Bansal M, Mendiratta G, Anand S, Kushwaha R, Kim R, Kustagi M, Iyer A, Chaganti RS, Califano A, Sumazin P.

BMC Genomics. 2015;16 Suppl 5:S4. doi: 10.1186/1471-2164-16-S5-S4. Epub 2015 May 26.

7.

Identifying candidate drivers of alcohol dependence-induced excessive drinking by assembly and interrogation of brain-specific regulatory networks.

Repunte-Canonigo V, Shin W, Vendruscolo LF, Lefebvre C, van der Stap L, Kawamura T, Schlosburg JE, Alvarez M, Koob GF, Califano A, Sanna PP.

Genome Biol. 2015 Feb 2;16(1):68. doi: 10.1186/s13059-015-0593-5.

8.

Preface: RECOMB/ISCB systems biology, regulatory genomics, and DREAM 2014 Special Issue.

Califano A, Kellis M, Stolovitzky G.

J Comput Biol. 2015 Apr;22(4):251-2. doi: 10.1089/cmb.2015.020P. No abstract available.

PMID:
25844665
9.

Assembly and interrogation of Alzheimer's disease genetic networks reveal novel regulators of progression.

Aubry S, Shin W, Crary JF, Lefort R, Qureshi YH, Lefebvre C, Califano A, Shelanski ML.

PLoS One. 2015 Mar 17;10(3):e0120352. doi: 10.1371/journal.pone.0120352. eCollection 2015.

10.

Sodium-reduced lean sausages with fish oil optimized by a mixture design approach.

Marchetti L, Argel N, Andrés SC, Califano AN.

Meat Sci. 2015 Jun;104:67-77. doi: 10.1016/j.meatsci.2015.02.005. Epub 2015 Feb 20.

PMID:
25725284
11.

Development of an ionic-liquid-based dispersive liquid-liquid microextraction method for the determination of antichagasic drugs in human breast milk: Optimization by central composite design.

Padró JM, Pellegrino Vidal RB, Echevarria RN, Califano AN, Reta MR.

J Sep Sci. 2015 May;38(9):1591-600. doi: 10.1002/jssc.201401367.

PMID:
25711461
12.

A systems approach to drug discovery in Alzheimer's disease.

Shelanski M, Shin W, Aubry S, Sims P, Alvarez MJ, Califano A.

Neurotherapeutics. 2015 Jan;12(1):126-31. doi: 10.1007/s13311-014-0335-5.

PMID:
25608936
13.

The Cyni framework for network inference in Cytoscape.

Guitart-Pla O, Kustagi M, Rügheimer F, Califano A, Schwikowski B.

Bioinformatics. 2015 May 1;31(9):1499-501. doi: 10.1093/bioinformatics/btu812. Epub 2014 Dec 18.

PMID:
25527096
14.

Mechanical and optical characterization of gelled matrices during storage.

Lorenzo G, Zaritzky N, Califano A.

Carbohydr Polym. 2015 Mar 6;117:825-35. doi: 10.1016/j.carbpol.2014.10.040. Epub 2014 Oct 24.

PMID:
25498706
15.
16.

A community computational challenge to predict the activity of pairs of compounds.

Bansal M, Yang J, Karan C, Menden MP, Costello JC, Tang H, Xiao G, Li Y, Allen J, Zhong R, Chen B, Kim M, Wang T, Heiser LM, Realubit R, Mattioli M, Alvarez MJ, Shen Y; NCI-DREAM Community, Gallahan D, Singer D, Saez-Rodriguez J, Xie Y, Stolovitzky G, Califano A; NCI-DREAM Community.

Nat Biotechnol. 2014 Dec;32(12):1213-22. doi: 10.1038/nbt.3052. Epub 2014 Nov 17.

17.

Predicting protein networks in cancer.

Califano A.

Nat Genet. 2014 Dec;46(12):1252-3. doi: 10.1038/ng.3156.

PMID:
25418743
18.

Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks.

Chiu HS, Llobet-Navas D, Yang X, Chung WJ, Ambesi-Impiombato A, Iyer A, Kim HR, Seviour EG, Luo Z, Sehgal V, Moss T, Lu Y, Ram P, Silva J, Mills GB, Califano A, Sumazin P.

Genome Res. 2015 Feb;25(2):257-67. doi: 10.1101/gr.178194.114. Epub 2014 Nov 5.

PMID:
25378249
19.

Interrogation of a context-specific transcription factor network identifies novel regulators of pluripotency.

Kushwaha R, Jagadish N, Kustagi M, Tomishima MJ, Mendiratta G, Bansal M, Kim HR, Sumazin P, Alvarez MJ, Lefebvre C, Villagrasa-Gonzalez P, Viale A, Korkola JE, Houldsworth J, Feldman DR, Bosl GJ, Califano A, Chaganti RS.

Stem Cells. 2015 Feb;33(2):367-77. doi: 10.1002/stem.1870.

PMID:
25336442
20.

Toward better benchmarking: challenge-based methods assessment in cancer genomics.

Boutros PC, Margolin AA, Stuart JM, Califano A, Stolovitzky G.

Genome Biol. 2014 Sep 17;15(9):462. doi: 10.1186/s13059-014-0462-7.

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Loading ...
Write to the Help Desk