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Items: 1 to 20 of 36

1.

Estimating where and how animals travel: an optimal framework for path reconstruction from autocorrelated tracking data.

Fleming CH, Fagan WF, Mueller T, Olson KA, Leimgruber P, Calabrese JM.

Ecology. 2016 Mar;97(3):576-82.

PMID:
27197385
2.

Detection of RNA-Protein Interactions in Living Cells with SHAPE.

Smola MJ, Calabrese JM, Weeks KM.

Biochemistry. 2015 Nov 24;54(46):6867-75. doi: 10.1021/acs.biochem.5b00977. Epub 2015 Nov 11.

PMID:
26544910
3.

Rigorous home range estimation with movement data: a new autocorrelated kernel density estimator.

Fleming CH, Fagan WF, Mueller T, Olson KA, Leimgruber P, Calabrese JM.

Ecology. 2015 May;96(5):1182-8.

PMID:
26236833
4.

Maximum-entropy description of animal movement.

Fleming CH, Subaşı Y, Calabrese JM.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Mar;91(3):032107. Epub 2015 Mar 4.

PMID:
25871054
5.

How far to go? Determinants of migration distance in land mammals.

Teitelbaum CS, Fagan WF, Fleming CH, Dressler G, Calabrese JM, Leimgruber P, Mueller T.

Ecol Lett. 2015 Jun;18(6):545-52. doi: 10.1111/ele.12435. Epub 2015 Apr 12.

PMID:
25865946
6.

Systematic discovery of Xist RNA binding proteins.

Chu C, Zhang QC, da Rocha ST, Flynn RA, Bharadwaj M, Calabrese JM, Magnuson T, Heard E, Chang HY.

Cell. 2015 Apr 9;161(2):404-16. doi: 10.1016/j.cell.2015.03.025. Epub 2015 Apr 2.

7.

A survey of imprinted gene expression in mouse trophoblast stem cells.

Calabrese JM, Starmer J, Schertzer MD, Yee D, Magnuson T.

G3 (Bethesda). 2015 Feb 23;5(5):751-9. doi: 10.1534/g3.114.016238.

8.

Minimal mechanisms for vegetation patterns in semiarid regions.

Martínez-García R, Calabrese JM, Hernández-García E, López C.

Philos Trans A Math Phys Eng Sci. 2014 Oct 28;372(2027). pii: 20140068. doi: 10.1098/rsta.2014.0068.

9.

Small RNA expression from the human macrosatellite DXZ4.

Pohlers M, Calabrese JM, Magnuson T.

G3 (Bethesda). 2014 Aug 21;4(10):1981-9. doi: 10.1534/g3.114.012260.

10.

From fine-scale foraging to home ranges: a semivariance approach to identifying movement modes across spatiotemporal scales.

Fleming CH, Calabrese JM, Mueller T, Olson KA, Leimgruber P, Fagan WF.

Am Nat. 2014 May;183(5):E154-67. doi: 10.1086/675504. Epub 2014 Mar 17.

PMID:
24739204
11.

Optimal search in interacting populations: Gaussian jumps versus Lévy flights.

Martínez-García R, Calabrese JM, López C.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Mar;89(3):032718. Epub 2014 Mar 26.

PMID:
24730885
12.

Conserving the world's finest grassland amidst ambitious national development.

Batsaikhan N, Buuveibaatar B, Chimed B, Enkhtuya O, Galbrakh D, Ganbaatar O, Lkhagvasuren B, Nandintsetseg D, Berger J, Calabrese JM, Edwards AE, Fagan WF, Fuller TK, Heiner M, Ito TY, Kaczensky P, Leimgruber P, Lushchekina A, Milner-Gulland EJ, Mueller T, Murray MG, Olson KA, Reading R, Schaller GB, Stubbe A, Stubbe M, Walzer C, Von Wehrden H, Whitten T.

Conserv Biol. 2014 Dec;28(6):1736-9. doi: 10.1111/cobi.12297. Epub 2014 Apr 8. No abstract available.

PMID:
24712745
13.

Evidence for local regulatory control of escape from imprinted X chromosome inactivation.

Mugford JW, Starmer J, Williams RL Jr, Calabrese JM, Mieczkowski P, Yee D, Magnuson T.

Genetics. 2014 Jun;197(2):715-23. doi: 10.1534/genetics.114.162800. Epub 2014 Mar 19.

14.

fourSig: a method for determining chromosomal interactions in 4C-Seq data.

Williams RL Jr, Starmer J, Mugford JW, Calabrese JM, Mieczkowski P, Yee D, Magnuson T.

Nucleic Acids Res. 2014 Apr;42(8):e68. doi: 10.1093/nar/gku156. Epub 2014 Feb 20.

15.

Topoisomerases facilitate transcription of long genes linked to autism.

King IF, Yandava CN, Mabb AM, Hsiao JS, Huang HS, Pearson BL, Calabrese JM, Starmer J, Parker JS, Magnuson T, Chamberlain SJ, Philpot BD, Zylka MJ.

Nature. 2013 Sep 5;501(7465):58-62. doi: 10.1038/nature12504. Epub 2013 Aug 28.

16.

Optimizing the search for resources by sharing information: Mongolian gazelles as a case study.

Martínez-García R, Calabrese JM, Mueller T, Olson KA, López C.

Phys Rev Lett. 2013 Jun 14;110(24):248106. Epub 2013 Jun 14.

PMID:
25165967
17.

Spatial patterns in mesic savannas: the local facilitation limit and the role of demographic stochasticity.

Martínez-García R, Calabrese JM, López C.

J Theor Biol. 2013 Sep 21;333:156-65. doi: 10.1016/j.jtbi.2013.05.024. Epub 2013 Jun 7.

PMID:
23747988
18.

Differentiation-driven nucleolar association of the mouse imprinted Kcnq1 locus.

Fedoriw AM, Calabrese JM, Mu W, Yee D, Magnuson T.

G3 (Bethesda). 2012 Dec;2(12):1521-8. doi: 10.1534/g3.112.004226. Epub 2012 Dec 1.

19.

Site-specific silencing of regulatory elements as a mechanism of X inactivation.

Calabrese JM, Sun W, Song L, Mugford JW, Williams L, Yee D, Starmer J, Mieczkowski P, Crawford GE, Magnuson T.

Cell. 2012 Nov 21;151(5):951-63. doi: 10.1016/j.cell.2012.10.037.

20.

The mouse DXZ4 homolog retains Ctcf binding and proximity to Pls3 despite substantial organizational differences compared to the primate macrosatellite.

Horakova AH, Calabrese JM, McLaughlin CR, Tremblay DC, Magnuson T, Chadwick BP.

Genome Biol. 2012 Aug 20;13(8):R70. doi: 10.1186/gb-2012-13-8-r70.

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