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Results: 12


Dissecting neural differentiation regulatory networks through epigenetic footprinting.

Ziller MJ, Edri R, Yaffe Y, Donaghey J, Pop R, Mallard W, Issner R, Gifford CA, Goren A, Xing J, Gu H, Cacchiarelli D, Tsankov AM, Epstein C, Rinn JL, Mikkelsen TS, Kohlbacher O, Gnirke A, Bernstein BE, Elkabetz Y, Meissner A.

Nature. 2015 Feb 19;518(7539):355-9. doi: 10.1038/nature13990. Epub 2014 Dec 24.


Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5' sites.

Schwartz S, Mumbach MR, Jovanovic M, Wang T, Maciag K, Bushkin GG, Mertins P, Ter-Ovanesyan D, Habib N, Cacchiarelli D, Sanjana NE, Freinkman E, Pacold ME, Satija R, Mikkelsen TS, Hacohen N, Zhang F, Carr SA, Lander ES, Regev A.

Cell Rep. 2014 Jul 10;8(1):284-96. doi: 10.1016/j.celrep.2014.05.048. Epub 2014 Jun 26.


The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.

Trapnell C, Cacchiarelli D, Grimsby J, Pokharel P, Li S, Morse M, Lennon NJ, Livak KJ, Mikkelsen TS, Rinn JL.

Nat Biotechnol. 2014 Apr;32(4):381-6. doi: 10.1038/nbt.2859. Epub 2014 Mar 23.


Brief report: importance of SOX8 for in vitro chondrogenic differentiation of human mesenchymal stromal cells.

Herlofsen SR, Høiby T, Cacchiarelli D, Zhang X, Mikkelsen TS, Brinchmann JE.

Stem Cells. 2014 Jun;32(6):1629-35. doi: 10.1002/stem.1642.


Biogenesis and function of non-coding RNAs in muscle differentiation and in Duchenne muscular dystrophy.

Twayana S, Legnini I, Cesana M, Cacchiarelli D, Morlando M, Bozzoni I.

Biochem Soc Trans. 2013 Aug;41(4):844-9. doi: 10.1042/BST20120353. Review.


A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA.

Cesana M, Cacchiarelli D, Legnini I, Santini T, Sthandier O, Chinappi M, Tramontano A, Bozzoni I.

Cell. 2011 Oct 14;147(2):358-69. doi: 10.1016/j.cell.2011.09.028. Erratum in: Cell. 2011 Nov 11;147(4):947.


miRNAs as serum biomarkers for Duchenne muscular dystrophy.

Cacchiarelli D, Legnini I, Martone J, Cazzella V, D'Amico A, Bertini E, Bozzoni I.

EMBO Mol Med. 2011 May;3(5):258-65. doi: 10.1002/emmm.201100133. Epub 2011 Mar 21.


miR-31 modulates dystrophin expression: new implications for Duchenne muscular dystrophy therapy.

Cacchiarelli D, Incitti T, Martone J, Cesana M, Cazzella V, Santini T, Sthandier O, Bozzoni I.

EMBO Rep. 2011 Feb;12(2):136-41. doi: 10.1038/embor.2010.208. Epub 2011 Jan 7.


MicroRNAs involved in molecular circuitries relevant for the Duchenne muscular dystrophy pathogenesis are controlled by the dystrophin/nNOS pathway.

Cacchiarelli D, Martone J, Girardi E, Cesana M, Incitti T, Morlando M, Nicoletti C, Santini T, Sthandier O, Barberi L, Auricchio A, Musarò A, Bozzoni I.

Cell Metab. 2010 Oct 6;12(4):341-51. doi: 10.1016/j.cmet.2010.07.008. Epub 2010 Aug 19.


Coupled RNA processing and transcription of intergenic primary microRNAs.

Ballarino M, Pagano F, Girardi E, Morlando M, Cacchiarelli D, Marchioni M, Proudfoot NJ, Bozzoni I.

Mol Cell Biol. 2009 Oct;29(20):5632-8. doi: 10.1128/MCB.00664-09. Epub 2009 Aug 10.


MicroRNAs as prime players in a combinatorial view of evolution.

Cacchiarelli D, Santoni D, Bozzoni I.

RNA Biol. 2008 Jul-Sep;5(3):120-122. Epub 2008 Jul 8.


Duplication of the dystroglycan gene in most branches of teleost fish.

Pavoni E, Cacchiarelli D, Tittarelli R, Orsini M, Galtieri A, Giardina B, Brancaccio A.

BMC Mol Biol. 2007 May 17;8:34.

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