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Items: 11

1.

[High-throughput sequencing: towards a genome-based diagnosis in infectious diseases].

Audebert C, Hot D, Lemoine Y, Caboche S.

Med Sci (Paris). 2014 Dec;30(12):1144-51. doi: 10.1051/medsci/20143012018. Epub 2014 Dec 24. Review. French.

2.

High-Throughput Sequencing, a VersatileWeapon to Support Genome-Based Diagnosis in Infectious Diseases: Applications to Clinical Bacteriology.

Caboche S, Audebert C, Hot D.

Pathogens. 2014 Apr 2;3(2):258-79. doi: 10.3390/pathogens3020258. Review.

3.

Biosynthesis: bioinformatics bolster a renaissance.

Caboche S.

Nat Chem Biol. 2014 Oct;10(10):798-800. doi: 10.1038/nchembio.1634. No abstract available.

PMID:
25229448
4.

Comparison of mapping algorithms used in high-throughput sequencing: application to Ion Torrent data.

Caboche S, Audebert C, Lemoine Y, Hot D.

BMC Genomics. 2014 Apr 5;15:264. doi: 10.1186/1471-2164-15-264.

5.

LeView: automatic and interactive generation of 2D diagrams for biomacromolecule/ligand interactions.

Caboche S.

J Cheminform. 2013 Aug 29;5(1):40. doi: 10.1186/1758-2946-5-40.

6.

A new fingerprint to predict nonribosomal peptides activity.

Abdo A, Caboche S, Leclère V, Jacques P, Pupin M.

J Comput Aided Mol Des. 2012 Oct;26(10):1187-94. doi: 10.1007/s10822-012-9608-4. Epub 2012 Sep 29.

7.

PDBe: Protein Data Bank in Europe.

Velankar S, Alhroub Y, Best C, Caboche S, Conroy MJ, Dana JM, Fernandez Montecelo MA, van Ginkel G, Golovin A, Gore SP, Gutmanas A, Haslam P, Hendrickx PM, Heuson E, Hirshberg M, John M, Lagerstedt I, Mir S, Newman LE, Oldfield TJ, Patwardhan A, Rinaldi L, Sahni G, Sanz-García E, Sen S, Slowley R, Suarez-Uruena A, Swaminathan GJ, Symmons MF, Vranken WF, Wainwright M, Kleywegt GJ.

Nucleic Acids Res. 2012 Jan;40(Database issue):D445-52. doi: 10.1093/nar/gkr998. Epub 2011 Nov 21.

8.

PDBe: Protein Data Bank in Europe.

Velankar S, Alhroub Y, Alili A, Best C, Boutselakis HC, Caboche S, Conroy MJ, Dana JM, van Ginkel G, Golovin A, Gore SP, Gutmanas A, Haslam P, Hirshberg M, John M, Lagerstedt I, Mir S, Newman LE, Oldfield TJ, Penkett CJ, Pineda-Castillo J, Rinaldi L, Sahni G, Sawka G, Sen S, Slowley R, Sousa da Silva AW, Suarez-Uruena A, Swaminathan GJ, Symmons MF, Vranken WF, Wainwright M, Kleywegt GJ.

Nucleic Acids Res. 2011 Jan;39(Database issue):D402-10. doi: 10.1093/nar/gkq985. Epub 2010 Nov 2.

9.

Diversity of monomers in nonribosomal peptides: towards the prediction of origin and biological activity.

Caboche S, Leclère V, Pupin M, Kucherov G, Jacques P.

J Bacteriol. 2010 Oct;192(19):5143-50. doi: 10.1128/JB.00315-10. Epub 2010 Aug 6.

10.

Structural pattern matching of nonribosomal peptides.

Caboche S, Pupin M, Leclère V, Jacques P, Kucherov G.

BMC Struct Biol. 2009 Mar 18;9:15. doi: 10.1186/1472-6807-9-15.

11.

NORINE: a database of nonribosomal peptides.

Caboche S, Pupin M, Leclère V, Fontaine A, Jacques P, Kucherov G.

Nucleic Acids Res. 2008 Jan;36(Database issue):D326-31. Epub 2007 Oct 2.

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