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tRNA anticodon loop modifications ensure protein homeostasis and cell morphogenesis in yeast.

Klassen R, Ciftci A, Funk J, Bruch A, Butter F, Schaffrath R.

Nucleic Acids Res. 2016 Aug 5. pii: gkw705. [Epub ahead of print]


Quantitative Proteomics Uncovers Novel Factors Involved in Developmental Differentiation of Trypanosoma brucei.

Dejung M, Subota I, Bucerius F, Dindar G, Freiwald A, Engstler M, Boshart M, Butter F, Janzen CJ.

PLoS Pathog. 2016 Feb 24;12(2):e1005439. doi: 10.1371/journal.ppat.1005439. eCollection 2016 Feb.


Reader interactome of epigenetic histone marks in birds.

Bluhm A, Casas-Vila N, Scheibe M, Butter F.

Proteomics. 2016 Feb;16(3):427-36. doi: 10.1002/pmic.201500217.


Identification of TTAGGG-binding proteins in Neurospora crassa, a fungus with vertebrate-like telomere repeats.

Casas-Vila N, Scheibe M, Freiwald A, Kappei D, Butter F.

BMC Genomics. 2015 Nov 17;16:965. doi: 10.1186/s12864-015-2158-0.


Piwi proteins and piRNAs in mammalian oocytes and early embryos.

Roovers EF, Rosenkranz D, Mahdipour M, Han CT, He N, Chuva de Sousa Lopes SM, van der Westerlaken LA, Zischler H, Butter F, Roelen BA, Ketting RF.

Cell Rep. 2015 Mar 31;10(12):2069-82. doi: 10.1016/j.celrep.2015.02.062. Epub 2015 Mar 26.


The coilin interactome identifies hundreds of small noncoding RNAs that traffic through Cajal bodies.

Machyna M, Kehr S, Straube K, Kappei D, Buchholz F, Butter F, Ule J, Hertel J, Stadler PF, Neugebauer KM.

Mol Cell. 2014 Nov 6;56(3):389-99. doi: 10.1016/j.molcel.2014.10.004. Epub 2014 Nov 6.


Deep proteomic evaluation of primary and cell line motoneuron disease models delineates major differences in neuronal characteristics.

Hornburg D, Drepper C, Butter F, Meissner F, Sendtner M, Mann M.

Mol Cell Proteomics. 2014 Dec;13(12):3410-20. doi: 10.1074/mcp.M113.037291. Epub 2014 Sep 5.


The ETS family member GABPα modulates androgen receptor signalling and mediates an aggressive phenotype in prostate cancer.

Sharma NL, Massie CE, Butter F, Mann M, Bon H, Ramos-Montoya A, Menon S, Stark R, Lamb AD, Scott HE, Warren AY, Neal DE, Mills IG.

Nucleic Acids Res. 2014 Jun;42(10):6256-69. doi: 10.1093/nar/gku281. Epub 2014 Apr 21.


On the extent and role of the small proteome in the parasitic eukaryote Trypanosoma brucei.

Ericson M, Janes MA, Butter F, Mann M, Ullu E, Tschudi C.

BMC Biol. 2014 Feb 19;12:14. doi: 10.1186/1741-7007-12-14.


A DNA-centric protein interaction map of ultraconserved elements reveals contribution of transcription factor binding hubs to conservation.

Viturawong T, Meissner F, Butter F, Mann M.

Cell Rep. 2013 Oct 31;5(2):531-45. doi: 10.1016/j.celrep.2013.09.022. Epub 2013 Oct 17.


Quantitative interaction screen of telomeric repeat-containing RNA reveals novel TERRA regulators.

Scheibe M, Arnoult N, Kappei D, Buchholz F, Decottignies A, Butter F, Mann M.

Genome Res. 2013 Dec;23(12):2149-57. doi: 10.1101/gr.151878.112. Epub 2013 Aug 6.


Alleles of a polymorphic ETV6 binding site in DCDC2 confer risk of reading and language impairment.

Powers NR, Eicher JD, Butter F, Kong Y, Miller LL, Ring SM, Mann M, Gruen JR.

Am J Hum Genet. 2013 Jul 11;93(1):19-28. doi: 10.1016/j.ajhg.2013.05.008. Epub 2013 Jun 6. Erratum in: Am J Hum Genet. 2014 May 1;94(5):798.


HOT1 is a mammalian direct telomere repeat-binding protein contributing to telomerase recruitment.

Kappei D, Butter F, Benda C, Scheibe M, Draškovič I, Stevense M, Novo CL, Basquin C, Araki M, Araki K, Krastev DB, Kittler R, Jessberger R, Londoño-Vallejo JA, Mann M, Buchholz F.

EMBO J. 2013 Jun 12;32(12):1681-701. doi: 10.1038/emboj.2013.105. Epub 2013 May 17.


Quantitative proteomic analysis reveals concurrent RNA-protein interactions and identifies new RNA-binding proteins in Saccharomyces cerevisiae.

Klass DM, Scheibe M, Butter F, Hogan GJ, Mann M, Brown PO.

Genome Res. 2013 Jun;23(6):1028-38. doi: 10.1101/gr.153031.112. Epub 2013 May 1.


Comparative proteomics of two life cycle stages of stable isotope-labeled Trypanosoma brucei reveals novel components of the parasite's host adaptation machinery.

Butter F, Bucerius F, Michel M, Cicova Z, Mann M, Janzen CJ.

Mol Cell Proteomics. 2013 Jan;12(1):172-9. doi: 10.1074/mcp.M112.019224. Epub 2012 Oct 22.


Proteome-wide analysis of disease-associated SNPs that show allele-specific transcription factor binding.

Butter F, Davison L, Viturawong T, Scheibe M, Vermeulen M, Todd JA, Mann M.

PLoS Genet. 2012 Sep;8(9):e1002982. doi: 10.1371/journal.pgen.1002982. Epub 2012 Sep 27.


Quantitative mass spectrometry and PAR-CLIP to identify RNA-protein interactions.

Scheibe M, Butter F, Hafner M, Tuschl T, Mann M.

Nucleic Acids Res. 2012 Oct;40(19):9897-902. doi: 10.1093/nar/gks746. Epub 2012 Aug 9.


TNF receptor 1 genetic risk mirrors outcome of anti-TNF therapy in multiple sclerosis.

Gregory AP, Dendrou CA, Attfield KE, Haghikia A, Xifara DK, Butter F, Poschmann G, Kaur G, Lambert L, Leach OA, Prömel S, Punwani D, Felce JH, Davis SJ, Gold R, Nielsen FC, Siegel RM, Mann M, Bell JI, McVean G, Fugger L.

Nature. 2012 Aug 23;488(7412):508-11. doi: 10.1038/nature11307.


Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers.

Vermeulen M, Eberl HC, Matarese F, Marks H, Denissov S, Butter F, Lee KK, Olsen JV, Hyman AA, Stunnenberg HG, Mann M.

Cell. 2010 Sep 17;142(6):967-80. doi: 10.1016/j.cell.2010.08.020.


A domesticated transposon mediates the effects of a single-nucleotide polymorphism responsible for enhanced muscle growth.

Butter F, Kappei D, Buchholz F, Vermeulen M, Mann M.

EMBO Rep. 2010 Apr;11(4):305-11. doi: 10.1038/embor.2010.6. Epub 2010 Feb 5.

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