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Results: 1 to 20 of 59

1.
2.

RNA polymerase structure, function, regulation, dynamics, fidelity, and roles in gene expression.

Kireeva ML, Kashlev M, Burton ZF.

Chem Rev. 2013 Nov 13;113(11):8325-30. doi: 10.1021/cr400436m. No abstract available.

PMID:
24219496
[PubMed - indexed for MEDLINE]
3.

Computational simulation strategies for analysis of multisubunit RNA polymerases.

Wang B, Feig M, Cukier RI, Burton ZF.

Chem Rev. 2013 Nov 13;113(11):8546-66. doi: 10.1021/cr400046x. Epub 2013 Aug 29. Review. No abstract available.

PMID:
23987500
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Energetic and structural details of the trigger-loop closing transition in RNA polymerase II.

Wang B, Predeus AV, Burton ZF, Feig M.

Biophys J. 2013 Aug 6;105(3):767-75. doi: 10.1016/j.bpj.2013.05.060.

PMID:
23931324
[PubMed - indexed for MEDLINE]
5.

Translocation and fidelity of Escherichia coli RNA polymerase.

Nedialkov YA, Burton ZF.

Transcription. 2013 Jul 11;4(3). [Epub ahead of print]

PMID:
23863783
[PubMed - as supplied by publisher]
Free PMC Article
6.

The RNA polymerase bridge helix YFI motif in catalysis, fidelity and translocation.

Nedialkov YA, Opron K, Assaf F, Artsimovitch I, Kireeva ML, Kashlev M, Cukier RI, Nudler E, Burton ZF.

Biochim Biophys Acta. 2013 Feb;1829(2):187-98. doi: 10.1016/j.bbagrm.2012.11.005. Epub 2012 Nov 30.

PMID:
23202476
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

RNA polymerase stalls in a post-translocated register and can hyper-translocate.

Nedialkov YA, Nudler E, Burton ZF.

Transcription. 2012 Sep-Oct;3(5):260-9. doi: 10.4161/trns.22307. Epub 2012 Sep 1.

PMID:
23132506
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Molecular dynamics and mutational analysis of the catalytic and translocation cycle of RNA polymerase.

Kireeva ML, Opron K, Seibold SA, Domecq C, Cukier RI, Coulombe B, Kashlev M, Burton ZF.

BMC Biophys. 2012 Jun 7;5:11. doi: 10.1186/2046-1682-5-11.

PMID:
22676913
[PubMed]
Free PMC Article
9.

Interaction of RNA polymerase II fork loop 2 with downstream non-template DNA regulates transcription elongation.

Kireeva ML, Domecq C, Coulombe B, Burton ZF, Kashlev M.

J Biol Chem. 2011 Sep 2;286(35):30898-910. doi: 10.1074/jbc.M111.260844. Epub 2011 Jul 5.

PMID:
21730074
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

RNA polymerase II with open and closed trigger loops: active site dynamics and nucleic acid translocation.

Feig M, Burton ZF.

Biophys J. 2010 Oct 20;99(8):2577-86. doi: 10.1016/j.bpj.2010.08.010.

PMID:
20959099
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Conformational coupling, bridge helix dynamics and active site dehydration in catalysis by RNA polymerase.

Seibold SA, Singh BN, Zhang C, Kireeva M, Domecq C, Bouchard A, Nazione AM, Feig M, Cukier RI, Coulombe B, Kashlev M, Hampsey M, Burton ZF.

Biochim Biophys Acta. 2010 Aug;1799(8):575-87. doi: 10.1016/j.bbagrm.2010.05.002. Epub 2010 May 15.

PMID:
20478425
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Translocation by multi-subunit RNA polymerases.

Kireeva M, Kashlev M, Burton ZF.

Biochim Biophys Acta. 2010 May-Jun;1799(5-6):389-401. doi: 10.1016/j.bbagrm.2010.01.007. Epub 2010 Jan 25. Review.

PMID:
20097318
[PubMed - indexed for MEDLINE]
Free Article
13.

RNA polymerase II flexibility during translocation from normal mode analysis.

Feig M, Burton ZF.

Proteins. 2010 Feb 1;78(2):434-46. doi: 10.1002/prot.22560.

PMID:
19714773
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Minimal promoter systems reveal the importance of conserved residues in the B-finger of human transcription factor IIB.

Thompson NE, Glaser BT, Foley KM, Burton ZF, Burgess RR.

J Biol Chem. 2009 Sep 11;284(37):24754-66. doi: 10.1074/jbc.M109.030486. Epub 2009 Jul 9.

PMID:
19590095
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Site-directed mutagenesis, purification and assay of Saccharomyces cerevisiae RNA polymerase II.

Domecq C, Kireeva M, Archambault J, Kashlev M, Coulombe B, Burton ZF.

Protein Expr Purif. 2010 Jan;69(1):83-90. doi: 10.1016/j.pep.2009.06.016. Epub 2009 Jun 28.

PMID:
19567268
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Millisecond phase kinetic analysis of elongation catalyzed by human, yeast, and Escherichia coli RNA polymerase.

Kireeva M, Nedialkov YA, Gong XQ, Zhang C, Xiong Y, Moon W, Burton ZF, Kashlev M.

Methods. 2009 Aug;48(4):333-45. doi: 10.1016/j.ymeth.2009.04.008. Epub 2009 May 4.

PMID:
19398005
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Transient reversal of RNA polymerase II active site closing controls fidelity of transcription elongation.

Kireeva ML, Nedialkov YA, Cremona GH, Purtov YA, Lubkowska L, Malagon F, Burton ZF, Strathern JN, Kashlev M.

Mol Cell. 2008 Jun 6;30(5):557-66. doi: 10.1016/j.molcel.2008.04.017.

PMID:
18538654
[PubMed - indexed for MEDLINE]
Free Article
18.
19.

NTP-driven translocation and regulation of downstream template opening by multi-subunit RNA polymerases.

Burton ZF, Feig M, Gong XQ, Zhang C, Nedialkov YA, Xiong Y.

Biochem Cell Biol. 2005 Aug;83(4):486-96. Review.

PMID:
16094452
[PubMed - indexed for MEDLINE]
20.

Dynamic error correction and regulation of downstream bubble opening by human RNA polymerase II.

Gong XQ, Zhang C, Feig M, Burton ZF.

Mol Cell. 2005 May 13;18(4):461-70.

PMID:
15893729
[PubMed - indexed for MEDLINE]
Free Article

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