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Results: 1 to 20 of 69

1.

Stochastic linear multistep methods for the simulation of chemical kinetics.

Barrio M, Burrage K, Burrage P.

J Chem Phys. 2015 Feb 14;142(6):064101. doi: 10.1063/1.4907008.

PMID:
25681881
2.

Multi-scale approach for simulating time-delay biochemical reaction systems.

Niu Y, Burrage K, Zhang C.

IET Syst Biol. 2015 Feb;9(1):31-8. doi: 10.1049/iet-syb.2013.0023.

PMID:
25569862
3.

Stochastic simulation in systems biology.

Székely T Jr, Burrage K.

Comput Struct Biotechnol J. 2014 Oct 30;12(20-21):14-25. doi: 10.1016/j.csbj.2014.10.003. eCollection 2014 Nov. Review.

4.

Application of stochastic phenomenological modelling to cell-to-cell and beat-to-beat electrophysiological variability in cardiac tissue.

Walmsley J, Mirams GR, Pitt-Francis J, Rodriguez B, Burrage K.

J Theor Biol. 2015 Jan 21;365:325-36. doi: 10.1016/j.jtbi.2014.10.029. Epub 2014 Nov 4.

5.

Stochastic dynamics of interacting haematopoietic stem cell niche lineages.

Székely T Jr, Burrage K, Mangel M, Bonsall MB.

PLoS Comput Biol. 2014 Sep 4;10(9):e1003794. doi: 10.1371/journal.pcbi.1003794. eCollection 2014 Sep.

6.

Efficient simulation of stochastic chemical kinetics with the Stochastic Bulirsch-Stoer extrapolation method.

Székely T Jr, Burrage K, Zygalakis KC, Barrio M.

BMC Syst Biol. 2014 Jun 18;8:71. doi: 10.1186/1752-0509-8-71.

7.

Fractional diffusion models of cardiac electrical propagation: role of structural heterogeneity in dispersion of repolarization.

Bueno-Orovio A, Kay D, Grau V, Rodriguez B, Burrage K.

J R Soc Interface. 2014 Aug 6;11(97):20140352. doi: 10.1098/rsif.2014.0352.

8.

Post-transcriptional regulation in the nucleus and cytoplasm: study of mean time to threshold (MTT) and narrow escape problem.

Holcman D, Dao Duc K, Jones A, Byrne H, Burrage K.

J Math Biol. 2015 Mar;70(4):805-28. doi: 10.1007/s00285-014-0782-y. Epub 2014 Apr 8.

PMID:
24710662
9.

Quantitative study of the effect of tissue microstructure on contraction in a computational model of rat left ventricle.

Carapella V, Bordas R, Pathmanathan P, Lohezic M, Schneider JE, Kohl P, Burrage K, Grau V.

PLoS One. 2014 Apr 2;9(4):e92792. doi: 10.1371/journal.pone.0092792. eCollection 2014.

10.

Population of computational rabbit-specific ventricular action potential models for investigating sources of variability in cellular repolarisation.

Gemmell P, Burrage K, Rodriguez B, Quinn TA.

PLoS One. 2014 Feb 28;9(2):e90112. doi: 10.1371/journal.pone.0090112. eCollection 2014.

11.

Studying the role of lipid rafts on protein receptor bindings with cellular automata.

Haack F, Burrage K, Redmer R, Uhrmacher AM.

IEEE/ACM Trans Comput Biol Bioinform. 2013 May-Jun;10(3):760-70. doi: 10.1109/TCBB.2013.40.

PMID:
24091408
12.

Studying the Role of Lipid Rafts on Protein Receptor Bindings with Cellular Automata.

Haack F, Burrage K, Redmer R, Uhrmacher AM.

IEEE/ACM Trans Comput Biol Bioinform. 2013 May 8. [Epub ahead of print]

PMID:
23669554
13.

Stability and convergence of an implicit numerical method for the space and time fractional Bloch-Torrey equation.

Yu Q, Liu F, Turner I, Burrage K.

Philos Trans A Math Phys Eng Sci. 2013 Apr 1;371(1990):20120150. doi: 10.1098/rsta.2012.0150. Print 2013 May 13.

PMID:
23547227
14.

mRNA expression levels in failing human hearts predict cellular electrophysiological remodeling: a population-based simulation study.

Walmsley J, Rodriguez JF, Mirams GR, Burrage K, Efimov IR, Rodriguez B.

PLoS One. 2013;8(2):e56359. doi: 10.1371/journal.pone.0056359. Epub 2013 Feb 20.

15.

Inferring diffusion in single live cells at the single-molecule level.

Robson A, Burrage K, Leake MC.

Philos Trans R Soc Lond B Biol Sci. 2012 Dec 24;368(1611):20120029. doi: 10.1098/rstb.2012.0029. Print 2013 Feb 5. Review.

16.

A higher-order numerical framework for stochastic simulation of chemical reaction systems.

Székely T Jr, Burrage K, Erban R, Zygalakis KC.

BMC Syst Biol. 2012 Jul 15;6:85. doi: 10.1186/1752-0509-6-85.

17.

Anomalous diffusion and multifractional Brownian motion: simulating molecular crowding and physical obstacles in systems biology.

Marquez-Lago TT, Leier A, Burrage K.

IET Syst Biol. 2012 Aug;6(4):134-42. doi: 10.1049/iet-syb.2011.0049.

PMID:
23039694
18.

Modeling ion channel dynamics through reflected stochastic differential equations.

Dangerfield CE, Kay D, Burrage K.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 May;85(5 Pt 1):051907. Epub 2012 May 15.

PMID:
23004788
19.

Bridging experiments, models and simulations: an integrative approach to validation in computational cardiac electrophysiology.

Carusi A, Burrage K, Rodríguez B.

Am J Physiol Heart Circ Physiol. 2012 Jul 15;303(2):H144-55. doi: 10.1152/ajpheart.01151.2011. Epub 2012 May 11. Review.

20.

Comparison of continuous and discrete stochastic ion channel models.

Dangerfield CE, Kay D, Burrage K.

Conf Proc IEEE Eng Med Biol Soc. 2011;2011:704-7. doi: 10.1109/IEMBS.2011.6090159.

PMID:
22254407
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