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Results: 1 to 20 of 64

1.

Efficient simulation of stochastic chemical kinetics with the Stochastic Bulirsch-Stoer extrapolation method.

Székely T Jr, Burrage K, Zygalakis KC, Barrio M.

BMC Syst Biol. 2014 Jun 18;8:71. doi: 10.1186/1752-0509-8-71.

PMID:
24939084
[PubMed - in process]
Free Article
2.

Fractional diffusion models of cardiac electrical propagation: role of structural heterogeneity in dispersion of repolarization.

Bueno-Orovio A, Kay D, Grau V, Rodriguez B, Burrage K.

J R Soc Interface. 2014 Aug 6;11(97):20140352. doi: 10.1098/rsif.2014.0352.

PMID:
24920109
[PubMed - in process]
Free Article
3.

Post-transcriptional regulation in the nucleus and cytoplasm: study of mean time to threshold (MTT) and narrow escape problem.

Holcman D, Dao Duc K, Jones A, Byrne H, Burrage K.

J Math Biol. 2014 Apr 8. [Epub ahead of print]

PMID:
24710662
[PubMed - as supplied by publisher]
4.

Quantitative study of the effect of tissue microstructure on contraction in a computational model of rat left ventricle.

Carapella V, Bordas R, Pathmanathan P, Lohezic M, Schneider JE, Kohl P, Burrage K, Grau V.

PLoS One. 2014 Apr 2;9(4):e92792. doi: 10.1371/journal.pone.0092792. eCollection 2014.

PMID:
24695115
[PubMed - in process]
Free PMC Article
5.

Population of computational rabbit-specific ventricular action potential models for investigating sources of variability in cellular repolarisation.

Gemmell P, Burrage K, Rodriguez B, Quinn TA.

PLoS One. 2014 Feb 28;9(2):e90112. doi: 10.1371/journal.pone.0090112. eCollection 2014.

PMID:
24587229
[PubMed - in process]
Free PMC Article
6.

Studying the role of lipid rafts on protein receptor bindings with cellular automata.

Haack F, Burrage K, Redmer R, Uhrmacher AM.

IEEE/ACM Trans Comput Biol Bioinform. 2013 May-Jun;10(3):760-70. doi: 10.1109/TCBB.2013.40.

PMID:
24091408
[PubMed - in process]
7.

Studying the Role of Lipid Rafts on Protein Receptor Bindings with Cellular Automata.

Haack F, Burrage K, Redmer R, Uhrmacher AM.

IEEE/ACM Trans Comput Biol Bioinform. 2013 May 8. [Epub ahead of print]

PMID:
23669554
[PubMed - as supplied by publisher]
8.

Stability and convergence of an implicit numerical method for the space and time fractional Bloch-Torrey equation.

Yu Q, Liu F, Turner I, Burrage K.

Philos Trans A Math Phys Eng Sci. 2013 Apr 1;371(1990):20120150. doi: 10.1098/rsta.2012.0150. Print 2013 May 13.

PMID:
23547227
[PubMed]
9.

mRNA expression levels in failing human hearts predict cellular electrophysiological remodeling: a population-based simulation study.

Walmsley J, Rodriguez JF, Mirams GR, Burrage K, Efimov IR, Rodriguez B.

PLoS One. 2013;8(2):e56359. doi: 10.1371/journal.pone.0056359. Epub 2013 Feb 20.

PMID:
23437117
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Inferring diffusion in single live cells at the single-molecule level.

Robson A, Burrage K, Leake MC.

Philos Trans R Soc Lond B Biol Sci. 2012 Dec 24;368(1611):20120029. doi: 10.1098/rstb.2012.0029. Print 2013 Feb 5. Review.

PMID:
23267182
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A higher-order numerical framework for stochastic simulation of chemical reaction systems.

Székely T Jr, Burrage K, Erban R, Zygalakis KC.

BMC Syst Biol. 2012 Jul 15;6:85. doi: 10.1186/1752-0509-6-85.

PMID:
23256696
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Anomalous diffusion and multifractional Brownian motion: simulating molecular crowding and physical obstacles in systems biology.

Marquez-Lago TT, Leier A, Burrage K.

IET Syst Biol. 2012 Aug;6(4):134-42. doi: 10.1049/iet-syb.2011.0049.

PMID:
23039694
[PubMed - indexed for MEDLINE]
13.

Modeling ion channel dynamics through reflected stochastic differential equations.

Dangerfield CE, Kay D, Burrage K.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 May;85(5 Pt 1):051907. Epub 2012 May 15.

PMID:
23004788
[PubMed - indexed for MEDLINE]
14.

Bridging experiments, models and simulations: an integrative approach to validation in computational cardiac electrophysiology.

Carusi A, Burrage K, Rodríguez B.

Am J Physiol Heart Circ Physiol. 2012 Jul 15;303(2):H144-55. doi: 10.1152/ajpheart.01151.2011. Epub 2012 May 11. Review.

PMID:
22582088
[PubMed - indexed for MEDLINE]
Free Article
15.

Comparison of continuous and discrete stochastic ion channel models.

Dangerfield CE, Kay D, Burrage K.

Conf Proc IEEE Eng Med Biol Soc. 2011;2011:704-7. doi: 10.1109/IEMBS.2011.6090159.

PMID:
22254407
[PubMed - indexed for MEDLINE]
16.

A multiscale investigation of repolarization variability and its role in cardiac arrhythmogenesis.

Pueyo E, Corrias A, Virág L, Jost N, Szél T, Varró A, Szentandrássy N, Nánási PP, Burrage K, Rodríguez B.

Biophys J. 2011 Dec 21;101(12):2892-902. doi: 10.1016/j.bpj.2011.09.060. Epub 2011 Dec 20.

PMID:
22208187
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Fast parallel Markov clustering in bioinformatics using massively parallel computing on GPU with CUDA and ELLPACK-R sparse format.

Bustamam A, Burrage K, Hamilton NA.

IEEE/ACM Trans Comput Biol Bioinform. 2012 May-Jun;9(3):679-92. doi: 10.1109/TCBB.2011.68.

PMID:
21483031
[PubMed - indexed for MEDLINE]
18.

Look before you leap: a confidence-based method for selecting species criticality while avoiding negative populations in τ-leaping.

Yates CA, Burrage K.

J Chem Phys. 2011 Feb 28;134(8):084109. doi: 10.1063/1.3554385.

PMID:
21361529
[PubMed - indexed for MEDLINE]
19.

Design of novel CXCR4 antagonists that are potent inhibitors of T-tropic (X4) HIV-1 replication.

Skerlj R, Bridger G, McEachern E, Harwig C, Smith C, Kaller A, Veale D, Yee H, Skupinska K, Wauthy R, Wang L, Baird I, Zhu Y, Burrage K, Yang W, Sartori M, Huskens D, De Clercq E, Schols D.

Bioorg Med Chem Lett. 2011 Mar 1;21(5):1414-8. doi: 10.1016/j.bmcl.2011.01.021. Epub 2011 Jan 11.

PMID:
21295470
[PubMed - indexed for MEDLINE]
20.

Determination of somatic and cancer stem cell self-renewing symmetric division rate using sphere assays.

Deleyrolle LP, Ericksson G, Morrison BJ, Lopez JA, Burrage K, Burrage P, Vescovi A, Rietze RL, Reynolds BA.

PLoS One. 2011 Jan 5;6(1):e15844. doi: 10.1371/journal.pone.0015844.

PMID:
21246056
[PubMed - indexed for MEDLINE]
Free PMC Article

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