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Items: 1 to 20 of 94

1.

Genome-Wide Analysis of Transposon and Retroviral Insertions Reveals Preferential Integrations in Regions of DNA Flexibility.

Vrljicak P, Tao S, Varshney GK, Quach HN, Joshi A, LaFave MC, Burgess SM, Sampath K.

G3 (Bethesda). 2016 Jan 27. pii: g3.115.026849. doi: 10.1534/g3.115.026849. [Epub ahead of print]

2.

A Computational Approach to Estimating Nondisjunction Frequency in Saccharomyces cerevisiae.

Chu DB, Burgess SM.

G3 (Bethesda). 2016 Jan 8. pii: g3.115.024380. doi: 10.1534/g3.115.024380. [Epub ahead of print]

3.

Development and Validation of the Eyelash Satisfaction Questionnaire.

Dang J, Cole JC, Burgess SM, Yang M, Daniels SR, Walt JG.

Aesthet Surg J. 2016 Feb;36(2):221-8. doi: 10.1093/asj/sjv154. Epub 2015 Dec 20.

4.

Understanding and Editing the Zebrafish Genome.

Varshney GK, Sood R, Burgess SM.

Adv Genet. 2015;92:1-52. doi: 10.1016/bs.adgen.2015.09.002. Epub 2015 Nov 12.

PMID:
26639914
5.

A 3D Searchable Database of Transgenic Zebrafish Gal4 and Cre Lines for Functional Neuroanatomy Studies.

Marquart GD, Tabor KM, Brown M, Strykowski JL, Varshney GK, LaFave MC, Mueller T, Burgess SM, Higashijima S, Burgess HA.

Front Neural Circuits. 2015 Nov 24;9:78. doi: 10.3389/fncir.2015.00078. eCollection 2015.

6.

Comparison of Patient-Reported Outcomes Requirements in Medical Guidelines for Pain, Migraine, Rheumatoid Arthritis, and Systemic Lupus Erythematosus: Europe Vs. United States.

Burgess SM, Gauthier M, Cala ML.

Value Health. 2015 Nov;18(7):A743. doi: 10.1016/j.jval.2015.09.2859. Epub 2015 Oct 20. No abstract available.

PMID:
26534161
7.

Development and Validation of A Patient-Reported Outcome Measure of the Psychological Impact of Submental Fat.

Gross TM, Burgess SM, Somogyi C, Lizzul PF, Beddingfield FC.

Value Health. 2015 Nov;18(7):A412. doi: 10.1016/j.jval.2015.09.989. Epub 2015 Oct 20. No abstract available.

PMID:
26532326
8.

CRISPRz: a database of zebrafish validated sgRNAs.

Varshney GK, Zhang S, Pei W, Adomako-Ankomah A, Fohtung J, Schaffer K, Carrington B, Maskeri A, Slevin C, Wolfsberg T, Ledin J, Sood R, Burgess SM.

Nucleic Acids Res. 2016 Jan 4;44(D1):D822-6. doi: 10.1093/nar/gkv998. Epub 2015 Oct 4.

9.

CRISPR-STAT: an easy and reliable PCR-based method to evaluate target-specific sgRNA activity.

Carrington B, Varshney GK, Burgess SM, Sood R.

Nucleic Acids Res. 2015 Dec 15;43(22):e157. doi: 10.1093/nar/gkv802. Epub 2015 Aug 7.

10.

Mutagenesis Screen Identifies agtpbp1 and eps15L1 as Essential for T lymphocyte Development in Zebrafish.

Seiler C, Gebhart N, Zhang Y, Shinton SA, Li YS, Ross NL, Liu X, Li Q, Bilbee AN, Varshney GK, LaFave MC, Burgess SM, Balciuniene J, Balciunas D, Hardy RR, Kappes DJ, Wiest DL, Rhodes J.

PLoS One. 2015 Jul 10;10(7):e0131908. doi: 10.1371/journal.pone.0131908. eCollection 2015.

11.

GeIST: a pipeline for mapping integrated DNA elements.

LaFave MC, Varshney GK, Burgess SM.

Bioinformatics. 2015 Oct 1;31(19):3219-21. doi: 10.1093/bioinformatics/btv350. Epub 2015 Jun 6.

PMID:
26049161
12.

High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9.

Varshney GK, Pei W, LaFave MC, Idol J, Xu L, Gallardo V, Carrington B, Bishop K, Jones M, Li M, Harper U, Huang SC, Prakash A, Chen W, Sood R, Ledin J, Burgess SM.

Genome Res. 2015 Jul;25(7):1030-42. doi: 10.1101/gr.186379.114. Epub 2015 Jun 5.

13.

Multiplex Conditional Mutagenesis Using Transgenic Expression of Cas9 and sgRNAs.

Yin L, Maddison LA, Li M, Kara N, LaFave MC, Varshney GK, Burgess SM, Patton JG, Chen W.

Genetics. 2015 Jun;200(2):431-41. doi: 10.1534/genetics.115.176917. Epub 2015 Apr 8.

14.

A Multifunctional Mutagenesis System for Analysis of Gene Function in Zebrafish.

Quach HN, Tao S, Vrljicak P, Joshi A, Ruan H, Sukumaran R, Varshney GK, LaFave MC; Ds Screen Team, Burgess SM, Winkler C, Emelyanov A, Parinov S, Sampath K.

G3 (Bethesda). 2015 Apr 2;5(6):1283-99. doi: 10.1534/g3.114.015842.

15.

Phenotype-driven chemical screening in zebrafish for compounds that inhibit collective cell migration identifies multiple pathways potentially involved in metastatic invasion.

Gallardo VE, Varshney GK, Lee M, Bupp S, Xu L, Shinn P, Crawford NP, Inglese J, Burgess SM.

Dis Model Mech. 2015 Jun;8(6):565-76. doi: 10.1242/dmm.018689. Epub 2015 Mar 25.

16.

Vector design influences hepatic genotoxicity after adeno-associated virus gene therapy.

Chandler RJ, LaFave MC, Varshney GK, Trivedi NS, Carrillo-Carrasco N, Senac JS, Wu W, Hoffmann V, Elkahloun AG, Burgess SM, Venditti CP.

J Clin Invest. 2015 Feb;125(2):870-80. doi: 10.1172/JCI79213. Epub 2015 Jan 20.

17.

Long-term correction of Sandhoff disease following intravenous delivery of rAAV9 to mouse neonates.

Walia JS, Altaleb N, Bello A, Kruck C, LaFave MC, Varshney GK, Burgess SM, Chowdhury B, Hurlbut D, Hemming R, Kobinger GP, Triggs-Raine B.

Mol Ther. 2015 Mar;23(3):414-22. doi: 10.1038/mt.2014.240. Epub 2014 Dec 17.

PMID:
25515709
18.

The impact of upper facial lines and psychological impact of crow's feet lines: content validation of the Facial Line Outcomes (FLO-11) Questionnaire.

Yaworsky A, Daniels S, Tully S, Beddingfield F 3rd, Kowalski J, Fitzgerald K, Somogyi C, Burgess SM.

J Cosmet Dermatol. 2014 Dec;13(4):297-306. doi: 10.1111/jocd.12117.

PMID:
25399622
19.

trieFinder: an efficient program for annotating Digital Gene Expression (DGE) tags.

Renaud G, LaFave MC, Liang J, Wolfsberg TG, Burgess SM.

BMC Bioinformatics. 2014 Oct 13;15:329. doi: 10.1186/1471-2105-15-329.

20.

A defined zebrafish line for high-throughput genetics and genomics: NHGRI-1.

LaFave MC, Varshney GK, Vemulapalli M, Mullikin JC, Burgess SM.

Genetics. 2014 Sep;198(1):167-70. doi: 10.1534/genetics.114.166769. Epub 2014 Jul 9.

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