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Results: 1 to 20 of 23

1.

Estimation of the methylation pattern distribution from deep sequencing data.

Lin P, Forêt S, Wilson SR, Burden CJ.

BMC Bioinformatics. 2015 May 6;16:145. doi: 10.1186/s12859-015-0600-6.

2.

Error estimates for the analysis of differential expression from RNA-seq count data.

Burden CJ, Qureshi SE, Wilson SR.

PeerJ. 2014 Sep 23;2:e576. doi: 10.7717/peerj.576. eCollection 2014.

3.

The distribution of word matches between Markovian sequences with periodic boundary conditions.

Burden CJ, Leopardi P, Forêt S.

J Comput Biol. 2014 Jan;21(1):41-63. doi: 10.1089/cmb.2012.0277. Epub 2013 Oct 26.

4.

Physico-chemical foundations underpinning microarray and next-generation sequencing experiments.

Harrison A, Binder H, Buhot A, Burden CJ, Carlon E, Gibas C, Gamble LJ, Halperin A, Hooyberghs J, Kreil DP, Levicky R, Noble PA, Ott A, Pettitt BM, Tautz D, Pozhitkov AE.

Nucleic Acids Res. 2013 Mar 1;41(5):2779-96. doi: 10.1093/nar/gks1358. Epub 2013 Jan 9. Review.

5.

Efficient experimental design and analysis strategies for the detection of differential expression using RNA-Sequencing.

Robles JA, Qureshi SE, Stephen SJ, Wilson SR, Burden CJ, Taylor JM.

BMC Genomics. 2012 Sep 17;13:484. doi: 10.1186/1471-2164-13-484.

6.

Alignment-free sequence comparison for biologically realistic sequences of moderate length.

Burden CJ, Jing J, Wilson SR.

Stat Appl Genet Mol Biol. 2012;11(1):Article 3.

PMID:
22624182
7.

Multiple gene expression profile alignment for microarray time-series data clustering.

Subhani N, Rueda L, Ngom A, Burden CJ.

Bioinformatics. 2010 Sep 15;26(18):2281-8. doi: 10.1093/bioinformatics/btq422. Epub 2010 Jul 16.

8.

Washing scaling of GeneChip microarray expression.

Binder H, Krohn K, Burden CJ.

BMC Bioinformatics. 2010 May 28;11:291. doi: 10.1186/1471-2105-11-291.

9.

Physico-chemical modelling of target depletion during hybridization on oligonulceotide microarrays.

Burden CJ, Binder H.

Phys Biol. 2009 Dec 21;7(1):016004. doi: 10.1088/1478-3975/7/1/016004.

PMID:
20026877
10.

Characterizing the D2 statistic: word matches in biological sequences.

Forêt S, Wilson SR, Burden CJ.

Stat Appl Genet Mol Biol. 2009;8:Article 43. doi: 10.2202/1544-6115.1447. Epub 2009 Oct 8.

PMID:
19883369
11.

Nonspecific hybridization scaling of microarray expression estimates: a physicochemical approach for chip-to-chip normalization.

Binder H, Brücker J, Burden CJ.

J Phys Chem B. 2009 Mar 5;113(9):2874-95. doi: 10.1021/jp808118m.

PMID:
19708217
12.

Understanding the physics of oligonucleotide microarrays: the Affymetrix spike-in data reanalysed.

Burden CJ.

Phys Biol. 2008 Mar 27;5(1):016004. doi: 10.1088/1478-3975/5/1/016004.

PMID:
18369276
13.
14.

Asymptotic behaviour and optimal word size for exact and approximate word matches between random sequences.

Forêt S, Kantorovitz MR, Burden CJ.

BMC Bioinformatics. 2006 Dec 18;7 Suppl 5:S21.

15.

Statistical analysis of adsorption models for oligonucleotide microarrays.

Burden CJ, Pittelkow YE, Wilson SR.

Stat Appl Genet Mol Biol. 2004;3:Article35. Epub 2004 Dec 9.

PMID:
16646815
16.

Discussion of "A Bayesian approach to DNA sequence segmentation".

Booth HS, Burden CJ, Maindonald JH, Santoso L, Wakefield MJ, Wilson SR.

Biometrics. 2005 Jun;61(2):635-7; discussion 637-9.

PMID:
16011717
17.

Erratum: Positronium states in three-dimensional QED

Allen TW, Burden CJ.

Phys Rev D Part Fields. 1996 Nov 15;54(10):6567. No abstract available.

PMID:
10020663
18.

Positronium states in three-dimensional QED.

Allen TW, Burden CJ.

Phys Rev D Part Fields. 1996 May 15;53(10):5842-5855. No abstract available.

PMID:
10019872
19.

Gauge covariance and the fermion-photon vertex in three- and four-dimensional, massless quantum electrodynamics.

Burden CJ, Roberts CD.

Phys Rev D Part Fields. 1993 Jun 15;47(12):5581-5588. No abstract available.

PMID:
10015585
20.

Photon polarization tensor and gauge dependence in three-dimensional quantum electrodynamics.

Burden CJ, Praschifka J, Roberts CD.

Phys Rev D Part Fields. 1992 Sep 15;46(6):2695-2702. No abstract available.

PMID:
10015200
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