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Results: 1 to 20 of 43

1.

Modelling transcriptional networks in leaf senescence.

Penfold CA, Buchanan-Wollaston V.

J Exp Bot. 2014 Jul;65(14):3859-73. doi: 10.1093/jxb/eru054. Epub 2014 Mar 5.

PMID:
24600015
[PubMed - in process]
2.

Wigwams: identifying gene modules co-regulated across multiple biological conditions.

Polanski K, Rhodes J, Hill C, Zhang P, Jenkins DJ, Kiddle SJ, Jironkin A, Beynon J, Buchanan-Wollaston V, Ott S, Denby KJ.

Bioinformatics. 2014 Apr 1;30(7):962-70. doi: 10.1093/bioinformatics/btt728. Epub 2013 Dec 18.

PMID:
24351708
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.

Bechtold U, Albihlal WS, Lawson T, Fryer MJ, Sparrow PA, Richard F, Persad R, Bowden L, Hickman R, Martin C, Beynon JL, Buchanan-Wollaston V, Baker NR, Morison JI, Schöffl F, Ott S, Mullineaux PM.

J Exp Bot. 2013 Aug;64(11):3467-81. doi: 10.1093/jxb/ert185. Epub 2013 Jul 4.

PMID:
23828547
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves.

Hickman R, Hill C, Penfold CA, Breeze E, Bowden L, Moore JD, Zhang P, Jackson A, Cooke E, Bewicke-Copley F, Mead A, Beynon J, Wild DL, Denby KJ, Ott S, Buchanan-Wollaston V.

Plant J. 2013 Jul;75(1):26-39. doi: 10.1111/tpj.12194. Epub 2013 May 11.

PMID:
23578292
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants.

Baxter L, Jironkin A, Hickman R, Moore J, Barrington C, Krusche P, Dyer NP, Buchanan-Wollaston V, Tiskin A, Beynon J, Denby K, Ott S.

Plant Cell. 2012 Oct;24(10):3949-65. doi: 10.1105/tpc.112.103010. Epub 2012 Oct 30.

PMID:
23110901
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Cell specific analysis of Arabidopsis leaves using fluorescence activated cell sorting.

Grønlund JT, Eyres A, Kumar S, Buchanan-Wollaston V, Gifford ML.

J Vis Exp. 2012 Oct 4;(68). pii: 4214. doi: 10.3791/4214.

PMID:
23070217
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis.

Windram O, Madhou P, McHattie S, Hill C, Hickman R, Cooke E, Jenkins DJ, Penfold CA, Baxter L, Breeze E, Kiddle SJ, Rhodes J, Atwell S, Kliebenstein DJ, Kim YS, Stegle O, Borgwardt K, Zhang C, Tabrett A, Legaie R, Moore J, Finkenstadt B, Wild DL, Mead A, Rand D, Beynon J, Ott S, Buchanan-Wollaston V, Denby KJ.

Plant Cell. 2012 Sep;24(9):3530-57. doi: 10.1105/tpc.112.102046. Epub 2012 Sep 28.

PMID:
23023172
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks.

Penfold CA, Buchanan-Wollaston V, Denby KJ, Wild DL.

Bioinformatics. 2012 Jun 15;28(12):i233-41. doi: 10.1093/bioinformatics/bts222.

PMID:
22689766
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Perturbation of cytokinin and ethylene-signalling pathways explain the strong rooting phenotype exhibited by Arabidopsis expressing the Schizosaccharomyces pombe mitotic inducer, cdc25.

Spadafora ND, Parfitt D, Marchbank A, Li S, Bruno L, Vaughan R, Nieuwland J, Buchanan-Wollaston V, Herbert RJ, Bitonti MB, Doonan J, Albani D, Prinsen E, Francis D, Rogers HJ.

BMC Plant Biol. 2012 Mar 27;12:45. doi: 10.1186/1471-2229-12-45.

PMID:
22452972
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A new broccoli × broccoli immortal mapping population and framework genetic map: tools for breeders and complex trait analysis.

Walley PG, Carder J, Skipper E, Mathas E, Lynn J, Pink D, Buchanan-Wollaston V.

Theor Appl Genet. 2012 Feb;124(3):467-84. doi: 10.1007/s00122-011-1721-6. Epub 2011 Oct 30.

PMID:
22038485
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.

Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston V.

Plant Cell. 2011 Mar;23(3):873-94. doi: 10.1105/tpc.111.083345. Epub 2011 Mar 29.

PMID:
21447789
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A specific group of genes respond to cold dehydration stress in cut Alstroemeria flowers whereas ambient dehydration stress accelerates developmental senescence expression patterns.

Wagstaff C, Bramke I, Breeze E, Thornber S, Harrison E, Thomas B, Buchanan-Wollaston V, Stead T, Rogers H.

J Exp Bot. 2010 Jun;61(11):2905-21. doi: 10.1093/jxb/erq113. Epub 2010 May 9.

PMID:
20457576
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Probing the reproducibility of leaf growth and molecular phenotypes: a comparison of three Arabidopsis accessions cultivated in ten laboratories.

Massonnet C, Vile D, Fabre J, Hannah MA, Caldana C, Lisec J, Beemster GT, Meyer RC, Messerli G, Gronlund JT, Perkovic J, Wigmore E, May S, Bevan MW, Meyer C, Rubio-Díaz S, Weigel D, Micol JL, Buchanan-Wollaston V, Fiorani F, Walsh S, Rinn B, Gruissem W, Hilson P, Hennig L, Willmitzer L, Granier C.

Plant Physiol. 2010 Apr;152(4):2142-57. doi: 10.1104/pp.109.148338. Epub 2010 Mar 3.

PMID:
20200072
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

A temporal precedence based clustering method for gene expression microarray data.

Krishna R, Li CT, Buchanan-Wollaston V.

BMC Bioinformatics. 2010 Jan 30;11:68. doi: 10.1186/1471-2105-11-68.

PMID:
20113513
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Temporal clustering by affinity propagation reveals transcriptional modules in Arabidopsis thaliana.

Kiddle SJ, Windram OP, McHattie S, Mead A, Beynon J, Buchanan-Wollaston V, Denby KJ, Mukherjee S.

Bioinformatics. 2010 Feb 1;26(3):355-62. doi: 10.1093/bioinformatics/btp673. Epub 2009 Dec 8.

PMID:
19996165
[PubMed - indexed for MEDLINE]
Free Article
16.

Impact of environmental inputs on reverse-engineering approach to network structures.

Wu J, Sinfield JL, Buchanan-Wollaston V, Feng J.

BMC Syst Biol. 2009 Dec 4;3:113. doi: 10.1186/1752-0509-3-113.

PMID:
19961587
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Listen to genes: dealing with microarray data in the frequency domain.

Feng J, Yi D, Krishna R, Guo S, Buchanan-Wollaston V.

PLoS One. 2009;4(4):e5098. doi: 10.1371/journal.pone.0005098. Epub 2009 Apr 6.

PMID:
22745650
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A molecular and structural characterization of senescing Arabidopsis siliques and comparison of transcriptional profiles with senescing petals and leaves.

Wagstaff C, Yang TJ, Stead AD, Buchanan-Wollaston V, Roberts JA.

Plant J. 2009 Feb;57(4):690-705. doi: 10.1111/j.1365-313X.2008.03722.x. Epub 2008 Oct 16.

PMID:
18980641
[PubMed - indexed for MEDLINE]
19.

Transcriptional regulation of plant senescence: from functional genomics to systems biology.

Breeze E, Harrison E, Page T, Warner N, Shen C, Zhang C, Buchanan-Wollaston V.

Plant Biol (Stuttg). 2008 Sep;10 Suppl 1:99-109. doi: 10.1111/j.1438-8677.2008.00076.x.

PMID:
18721315
[PubMed - indexed for MEDLINE]
20.

A comparison of leaf and petal senescence in wallflower reveals common and distinct patterns of gene expression and physiology.

Price AM, Aros Orellana DF, Salleh FM, Stevens R, Acock R, Buchanan-Wollaston V, Stead AD, Rogers HJ.

Plant Physiol. 2008 Aug;147(4):1898-912. doi: 10.1104/pp.108.120402. Epub 2008 Jun 6.

PMID:
18539778
[PubMed - indexed for MEDLINE]
Free PMC Article
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