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Results: 1 to 20 of 33

1.

Development of forensic assay signatures for ebolaviruses.

Song J, Doggett N, Wren M, Burr T, Fenimore PW, Hatcher EL, Bruno WJ, Li PE, Stubben C, Wolinsky M.

J Forensic Sci. 2015 Mar;60(2):315-25. doi: 10.1111/1556-4029.12655. Epub 2015 Feb 10.

PMID:
25677086
2.

Automated maximum likelihood separation of signal from baseline in noisy quantal data.

Bruno WJ, Ullah G, Mak DO, Pearson JE.

Biophys J. 2013 Jul 2;105(1):68-79. doi: 10.1016/j.bpj.2013.02.060.

3.

Rapid phylogenetic and functional classification of short genomic fragments with signature peptides.

Berendzen J, Bruno WJ, Cohn JD, Hengartner NW, Kuske CR, McMahon BH, Wolinsky MA, Xie G.

BMC Res Notes. 2012 Aug 28;5:460. doi: 10.1186/1756-0500-5-460.

4.

Simplification of reversible Markov chains by removal of states with low equilibrium occupancy.

Ullah G, Bruno WJ, Pearson JE.

J Theor Biol. 2012 Oct 21;311:117-29. doi: 10.1016/j.jtbi.2012.07.007. Epub 2012 Jul 20.

5.
6.

The evolutionary rate dynamically tracks changes in HIV-1 epidemics: application of a simple method for optimizing the evolutionary rate in phylogenetic trees with longitudinal data.

Maljkovic Berry I, Athreya G, Kothari M, Daniels M, Bruno WJ, Korber B, Kuiken C, Ribeiro RM, Leitner T.

Epidemics. 2009 Dec;1(4):230-9. doi: 10.1016/j.epidem.2009.10.003. Epub 2009 Nov 12.

7.

Predicting phenotype and emerging strains among Chlamydia trachomatis infections.

Dean D, Bruno WJ, Wan R, Gomes JP, Devignot S, Mehari T, de Vries HJ, Morré SA, Myers G, Read TD, Spratt BG.

Emerg Infect Dis. 2009 Sep;15(9):1385-94. doi: 10.3201/eid1509.090272.

8.

Classification of hepatitis C virus and human immunodeficiency virus-1 sequences with the branching index.

Hraber P, Kuiken C, Waugh M, Geer S, Bruno WJ, Leitner T.

J Gen Virol. 2008 Sep;89(Pt 9):2098-107. doi: 10.1099/vir.0.83657-0.

10.

Transformations that preserve detailed balance in Markov models.

Bruno WJ, Pearson JE.

J Comput Biol. 2006 Nov;13(9):1574-8.

PMID:
17147480
11.

Evolution of Chlamydia trachomatis diversity occurs by widespread interstrain recombination involving hotspots.

Gomes JP, Bruno WJ, Nunes A, Santos N, Florindo C, Borrego MJ, Dean D.

Genome Res. 2007 Jan;17(1):50-60. Epub 2006 Nov 7.

12.

Genotype turnover by reassortment of replication complex genes from avian influenza A virus.

Macken CA, Webby RJ, Bruno WJ.

J Gen Virol. 2006 Oct;87(Pt 10):2803-15.

PMID:
16963738
13.

On imposing detailed balance in complex reaction mechanisms.

Yang J, Bruno WJ, Hlavacek WS, Pearson JE.

Biophys J. 2006 Aug 1;91(3):1136-41. Epub 2006 May 12. No abstract available.

15.

Using independent open-to-closed transitions to simplify aggregated Markov models of ion channel gating kinetics.

Bruno WJ, Yang J, Pearson JE.

Proc Natl Acad Sci U S A. 2005 May 3;102(18):6326-31. Epub 2005 Apr 20. Erratum in: Proc Natl Acad Sci U S A. 2005 Jun 21;102(25):9086.

16.

The sequence and analysis of duplication-rich human chromosome 16.

Martin J, Han C, Gordon LA, Terry A, Prabhakar S, She X, Xie G, Hellsten U, Chan YM, Altherr M, Couronne O, Aerts A, Bajorek E, Black S, Blumer H, Branscomb E, Brown NC, Bruno WJ, Buckingham JM, Callen DF, Campbell CS, Campbell ML, Campbell EW, Caoile C, Challacombe JF, Chasteen LA, Chertkov O, Chi HC, Christensen M, Clark LM, Cohn JD, Denys M, Detter JC, Dickson M, Dimitrijevic-Bussod M, Escobar J, Fawcett JJ, Flowers D, Fotopulos D, Glavina T, Gomez M, Gonzales E, Goodstein D, Goodwin LA, Grady DL, Grigoriev I, Groza M, Hammon N, Hawkins T, Haydu L, Hildebrand CE, Huang W, Israni S, Jett J, Jewett PB, Kadner K, Kimball H, Kobayashi A, Krawczyk MC, Leyba T, Longmire JL, Lopez F, Lou Y, Lowry S, Ludeman T, Manohar CF, Mark GA, McMurray KL, Meincke LJ, Morgan J, Moyzis RK, Mundt MO, Munk AC, Nandkeshwar RD, Pitluck S, Pollard M, Predki P, Parson-Quintana B, Ramirez L, Rash S, Retterer J, Ricke DO, Robinson DL, Rodriguez A, Salamov A, Saunders EH, Scott D, Shough T, Stallings RL, Stalvey M, Sutherland RD, Tapia R, Tesmer JG, Thayer N, Thompson LS, Tice H, Torney DC, Tran-Gyamfi M, Tsai M, Ulanovsky LE, Ustaszewska A, Vo N, White PS, Williams AL, Wills PL, Wu JR, Wu K, Yang J, Dejong P, Bruce D, Doggett NA, Deaven L, Schmutz J, Grimwood J, Richardson P, Rokhsar DS, Eichler EE, Gilna P, Lucas SM, Myers RM, Rubin EM, Pennacchio LA.

Nature. 2004 Dec 23;432(7020):988-94.

PMID:
15616553
18.

The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise.

Dutilh BE, Huynen MA, Bruno WJ, Snel B.

J Mol Evol. 2004 May;58(5):527-39.

PMID:
15170256
19.

Evolutionary HMMs: a Bayesian approach to multiple alignment.

Holmes I, Bruno WJ.

Bioinformatics. 2001 Sep;17(9):803-20.

20.

Performance of a divergence time estimation method under a probabilistic model of rate evolution.

Kishino H, Thorne JL, Bruno WJ.

Mol Biol Evol. 2001 Mar;18(3):352-61.

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