Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 91

1.

HIV-1 adaptation to HLA: a window into virus-host immune interactions.

Carlson JM, Le AQ, Shahid A, Brumme ZL.

Trends Microbiol. 2015 Jan 19. pii: S0966-842X(14)00265-0. doi: 10.1016/j.tim.2014.12.008. [Epub ahead of print] Review.

PMID:
25613992
[PubMed - as supplied by publisher]
2.

Immune screening identifies novel T cell targets encoded by anti-sense reading frames of HIV-1.

Berger CT, Llano A, Carlson JM, Brumme ZL, Brockman MA, Cedeño S, Harrigan PR, Kaufmann DE, Heckerman D, Meyerhans A, Brander C.

J Virol. 2015 Jan 14. pii: JVI.03435-14. [Epub ahead of print]

PMID:
25589651
[PubMed - as supplied by publisher]
3.

Impact of HLA-driven HIV adaptation on virulence in populations of high HIV seroprevalence.

Payne R, Muenchhoff M, Mann J, Roberts HE, Matthews P, Adland E, Hempenstall A, Huang KH, Brockman M, Brumme Z, Sinclair M, Miura T, Frater J, Essex M, Shapiro R, Walker BD, Ndung'u T, McLean AR, Carlson JM, Goulder PJ.

Proc Natl Acad Sci U S A. 2014 Dec 16;111(50):E5393-400. doi: 10.1073/pnas.1413339111. Epub 2014 Dec 1.

PMID:
25453107
[PubMed - in process]
Free PMC Article
4.

GWATCH: a web platform for automated gene association discovery analysis.

Svitin A, Malov S, Cherkasov N, Geerts P, Rotkevich M, Dobrynin P, Shevchenko A, Guan L, Troyer J, Hendrickson S, Dilks HH, Oleksyk TK, Donfield S, Gomperts E, Jabs DA, Sezgin E, Van Natta M, Harrigan PR, Brumme ZL, O'Brien SJ.

Gigascience. 2014 Nov 5;3:18. doi: 10.1186/2047-217X-3-18. eCollection 2014.

PMID:
25374661
[PubMed]
Free PMC Article
5.

Early immune adaptation in HIV-1 revealed by population-level approaches.

Martin E, Carlson JM, Le AQ, Chopera DR, McGovern R, Rahman MA, Ng C, Jessen H, Kelleher AD, Markowitz M, Allen TM, Milloy MJ, Carrington M, Wainberg MA, Brumme ZL.

Retrovirology. 2014 Aug 29;11(1):64. doi: 10.1186/s12977-014-0064-1.

PMID:
25212686
[PubMed - in process]
Free PMC Article
6.

Nef-mediated down-regulation of CD4 and HLA class I in HIV-1 subtype C infection: association with disease progression and influence of immune pressure.

Mann JK, Chopera D, Omarjee S, Kuang XT, Le AQ, Anmole G, Danroth R, Mwimanzi P, Reddy T, Carlson J, Radebe M, Goulder PJ, Walker BD, Abdool Karim S, Novitsky V, Williamson C, Brockman MA, Brumme ZL, Ndung'u T.

Virology. 2014 Nov;468-470:214-25. doi: 10.1016/j.virol.2014.08.009. Epub 2014 Sep 3.

PMID:
25193656
[PubMed - in process]
7.

Impaired Nef function is associated with early control of HIV-1 viremia.

Kuang XT, Li X, Anmole G, Mwimanzi P, Shahid A, Le AQ, Chong L, Qian H, Miura T, Markle T, Baraki B, Connick E, Daar ES, Jessen H, Kelleher AD, Little S, Markowitz M, Pereyra F, Rosenberg ES, Walker BD, Ueno T, Brumme ZL, Brockman MA.

J Virol. 2014 Sep 1;88(17):10200-13. doi: 10.1128/JVI.01334-14. Epub 2014 Jun 25.

PMID:
24965469
[PubMed - indexed for MEDLINE]
8.

Switching and emergence of CTL epitopes in HIV-1 infection.

Han C, Kawana-Tachikawa A, Shimizu A, Zhu D, Nakamura H, Adachi E, Kikuchi T, Koga M, Koibuchi T, Gao GF, Sato Y, Yamagata A, Martin E, Fukai S, Brumme ZL, Iwamoto A.

Retrovirology. 2014 May 21;11:38. doi: 10.1186/1742-4690-11-38.

PMID:
24886641
[PubMed - in process]
Free PMC Article
9.

Genotypic and functional impact of HIV-1 adaptation to its host population during the North American epidemic.

Cotton LA, Kuang XT, Le AQ, Carlson JM, Chan B, Chopera DR, Brumme CJ, Markle TJ, Martin E, Shahid A, Anmole G, Mwimanzi P, Nassab P, Penney KA, Rahman MA, Milloy MJ, Schechter MT, Markowitz M, Carrington M, Walker BD, Wagner T, Buchbinder S, Fuchs J, Koblin B, Mayer KH, Harrigan PR, Brockman MA, Poon AF, Brumme ZL.

PLoS Genet. 2014 Apr 24;10(4):e1004295. doi: 10.1371/journal.pgen.1004295. eCollection 2014 Apr.

PMID:
24762668
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

An evaluation of phylogenetic methods for reconstructing transmitted HIV variants using longitudinal clonal HIV sequence data.

McCloskey RM, Liang RH, Harrigan PR, Brumme ZL, Poon AF.

J Virol. 2014 Jun;88(11):6181-94. doi: 10.1128/JVI.00483-14. Epub 2014 Mar 19.

PMID:
24648453
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Host-specific adaptation of HIV-1 subtype B in the Japanese population.

Chikata T, Carlson JM, Tamura Y, Borghan MA, Naruto T, Hashimoto M, Murakoshi H, Le AQ, Mallal S, John M, Gatanaga H, Oka S, Brumme ZL, Takiguchi M.

J Virol. 2014 May;88(9):4764-75. doi: 10.1128/JVI.00147-14. Epub 2014 Feb 12.

PMID:
24522911
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Structure of TCR and antigen complexes at an immunodominant CTL epitope in HIV-1 infection.

Shimizu A, Kawana-Tachikawa A, Yamagata A, Han C, Zhu D, Sato Y, Nakamura H, Koibuchi T, Carlson J, Martin E, Brumme CJ, Shi Y, Gao GF, Brumme ZL, Fukai S, Iwamoto A.

Sci Rep. 2013 Nov 6;3:3097. doi: 10.1038/srep03097.

PMID:
24192765
[PubMed - in process]
Free PMC Article
13.

A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control.

Bartha I, Carlson JM, Brumme CJ, McLaren PJ, Brumme ZL, John M, Haas DW, Martinez-Picado J, Dalmau J, López-Galíndez C, Casado C, Rauch A, Günthard HF, Bernasconi E, Vernazza P, Klimkait T, Yerly S, O'Brien SJ, Listgarten J, Pfeifer N, Lippert C, Fusi N, Kutalik Z, Allen TM, Müller V, Harrigan PR, Heckerman D, Telenti A, Fellay J.

Elife. 2013 Oct 29;2:e01123. doi: 10.7554/eLife.01123.

PMID:
24171102
[PubMed - in process]
Free PMC Article
14.

Ability of HIV-1 Nef to downregulate CD4 and HLA class I differs among viral subtypes.

Mann JK, Byakwaga H, Kuang XT, Le AQ, Brumme CJ, Mwimanzi P, Omarjee S, Martin E, Lee GQ, Baraki B, Danroth R, McCloskey R, Muzoora C, Bangsberg DR, Hunt PW, Goulder PJ, Walker BD, Harrigan PR, Martin JN, Ndung'u T, Brockman MA, Brumme ZL.

Retrovirology. 2013 Sep 16;10:100. doi: 10.1186/1742-4690-10-100.

PMID:
24041011
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

No evidence for selection of HIV-1 with enhanced gag-protease or Nef function among breakthrough infections in the CAPRISA 004 tenofovir microbicide trial.

Chopera DR, Mann JK, Mwimanzi P, Omarjee S, Kuang XT, Ndabambi N, Goodier S, Martin E, Naranbhai V, Karim SA, Karim QA, Brumme ZL, Ndung'u T, Williamson C, Brockman MA; CAPRISA 004 TRAPS Team.

PLoS One. 2013 Aug 28;8(8):e71758. doi: 10.1371/journal.pone.0071758. eCollection 2013.

PMID:
24015191
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Influence of HLA-C expression level on HIV control.

Apps R, Qi Y, Carlson JM, Chen H, Gao X, Thomas R, Yuki Y, Del Prete GQ, Goulder P, Brumme ZL, Brumme CJ, John M, Mallal S, Nelson G, Bosch R, Heckerman D, Stein JL, Soderberg KA, Moody MA, Denny TN, Zeng X, Fang J, Moffett A, Lifson JD, Goedert JJ, Buchbinder S, Kirk GD, Fellay J, McLaren P, Deeks SG, Pereyra F, Walker B, Michael NL, Weintrob A, Wolinsky S, Liao W, Carrington M.

Science. 2013 Apr 5;340(6128):87-91. doi: 10.1126/science.1232685.

PMID:
23559252
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A method for killer-cell immunoglobulin-like receptor (KIR) 3DL1/3DS1 genotyping using DNA recovered from frozen plasma.

Shahid A, Chopera DR, Martin E, Penney KA, Milloy MJ, Brumme ZL.

J Immunol Methods. 2013 May 31;391(1-2):154-62. doi: 10.1016/j.jim.2013.03.005. Epub 2013 Mar 21.

PMID:
23524032
[PubMed - indexed for MEDLINE]
18.

Dynamic range of Nef functions in chronic HIV-1 infection.

Mwimanzi P, Markle TJ, Ogata Y, Martin E, Tokunaga M, Mahiti M, Kuang XT, Walker BD, Brockman MA, Brumme ZL, Ueno T.

Virology. 2013 May 10;439(2):74-80. doi: 10.1016/j.virol.2013.02.005. Epub 2013 Mar 13.

PMID:
23490051
[PubMed - indexed for MEDLINE]
Free Article
19.

Frequent and variable cytotoxic-T-lymphocyte escape-associated fitness costs in the human immunodeficiency virus type 1 subtype B Gag proteins.

Boutwell CL, Carlson JM, Lin TH, Seese A, Power KA, Peng J, Tang Y, Brumme ZL, Heckerman D, Schneidewind A, Allen TM.

J Virol. 2013 Apr;87(7):3952-65. doi: 10.1128/JVI.03233-12. Epub 2013 Jan 30.

PMID:
23365420
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Impact of antiretroviral therapy duration and intensification on isolated shedding of HIV-1 RNA in semen.

Osborne BJ, Sheth PM, Yi TJ, Kovacs C, Benko E, Porte Cl, Huibner S, Le AQ, Danroth R, Baraki B, Mazzulli T, Brumme ZL, Kaul R.

J Infect Dis. 2013 Apr 15;207(8):1226-34. doi: 10.1093/infdis/jit026. Epub 2013 Jan 17.

PMID:
23329849
[PubMed - indexed for MEDLINE]
Free Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Loading ...
Write to the Help Desk