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Results: 1 to 20 of 175

1.

An alternative method for the calculation of joint probability distributions. Application to the expectation of the triplet invariant.

Brosius J.

Acta Crystallogr A Found Adv. 2015 Jan;71(Pt 1):76-81. doi: 10.1107/S2053273314023560. Epub 2015 Jan 1.

PMID:
25537390
[PubMed - in process]
2.

Multiple Lineages of Ancient CR1 Retroposons Shaped the Early Genome Evolution of Amniotes.

Suh A, Churakov G, Ramakodi MP, Platt RN 2nd, Jurka J, Kojima KK, Caballero J, Smit AF, Vliet KA, Hoffmann FG, Brosius J, Green RE, Braun EL, Ray DA, Schmitz J.

Genome Biol Evol. 2014 Dec 11;7(1):205-17. doi: 10.1093/gbe/evu256.

PMID:
25503085
[PubMed - in process]
Free Article
3.

GPAC-Genome Presence/Absence Compiler: A Web Application to Comparatively Visualize Multiple Genome-Level Changes.

Noll A, Grundmann N, Churakov G, Brosius J, Makałowski W, Schmitz J.

Mol Biol Evol. 2015 Jan;32(1):275-86. doi: 10.1093/molbev/msu276. Epub 2014 Sep 25.

PMID:
25261406
[PubMed - in process]
4.

The persistent contributions of RNA to eukaryotic gen(om)e architecture and cellular function.

Brosius J.

Cold Spring Harb Perspect Biol. 2014 Jul 31;6(12):a016089. doi: 10.1101/cshperspect.a016089.

PMID:
25081515
[PubMed - in process]
5.

Biases in small RNA deep sequencing data.

Raabe CA, Tang TH, Brosius J, Rozhdestvensky TS.

Nucleic Acids Res. 2014 Feb;42(3):1414-26. doi: 10.1093/nar/gkt1021. Epub 2013 Nov 5. Review.

PMID:
24198247
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Alternative processing as evolutionary mechanism for the origin of novel nonprotein coding RNAs.

Mo D, Raabe CA, Reinhardt R, Brosius J, Rozhdestvensky TS.

Genome Biol Evol. 2013;5(11):2061-71. doi: 10.1093/gbe/evt155.

PMID:
24132753
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The genome of a Mesozoic paleovirus reveals the evolution of hepatitis B viruses.

Suh A, Brosius J, Schmitz J, Kriegs JO.

Nat Commun. 2013;4:1791. doi: 10.1038/ncomms2798.

PMID:
23653203
[PubMed - indexed for MEDLINE]
8.

Retrophylogenomics place tarsiers on the evolutionary branch of anthropoids.

Hartig G, Churakov G, Warren WC, Brosius J, Makałowski W, Schmitz J.

Sci Rep. 2013;3:1756. doi: 10.1038/srep01756.

PMID:
23629008
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Ancestry of the Australian termitivorous numbat.

Zemann A, Churakov G, Donnellan S, Grützner F, Zhao F, Brosius J, Schmitz J.

Mol Biol Evol. 2013 May;30(5):1041-5. doi: 10.1093/molbev/mst032. Epub 2013 Feb 21.

PMID:
23429857
[PubMed - indexed for MEDLINE]
Free Article
10.

Genomic impact of eukaryotic transposable elements.

Arkhipova IR, Batzer MA, Brosius J, Feschotte C, Moran JV, Schmitz J, Jurka J.

Mob DNA. 2012 Nov 21;3(1):19. doi: 10.1186/1759-8753-3-19.

PMID:
23171443
[PubMed]
Free PMC Article
11.

A universal method for the study of CR1 retroposons in nonmodel bird genomes.

Suh A, Kriegs JO, Donnellan S, Brosius J, Schmitz J.

Mol Biol Evol. 2012 Oct;29(10):2899-903. Epub 2012 Apr 20.

PMID:
22522308
[PubMed - indexed for MEDLINE]
Free Article
12.

Retroposon insertion patterns of neoavian birds: strong evidence for an extensive incomplete lineage sorting era.

Matzke A, Churakov G, Berkes P, Arms EM, Kelsey D, Brosius J, Kriegs JO, Schmitz J.

Mol Biol Evol. 2012 Jun;29(6):1497-501. doi: 10.1093/molbev/msr319. Epub 2012 Jan 3.

PMID:
22319163
[PubMed - indexed for MEDLINE]
Free Article
13.

Mesozoic retroposons reveal parrots as the closest living relatives of passerine birds.

Suh A, Paus M, Kiefmann M, Churakov G, Franke FA, Brosius J, Kriegs JO, Schmitz J.

Nat Commun. 2011 Aug 23;2:443. doi: 10.1038/ncomms1448.

PMID:
21863010
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Exonization of transposed elements: A challenge and opportunity for evolution.

Schmitz J, Brosius J.

Biochimie. 2011 Nov;93(11):1928-34. doi: 10.1016/j.biochi.2011.07.014. Epub 2011 Jul 26. Review.

PMID:
21787833
[PubMed - indexed for MEDLINE]
15.

Retroposon insertions and the chronology of avian sex chromosome evolution.

Suh A, Kriegs JO, Brosius J, Schmitz J.

Mol Biol Evol. 2011 Nov;28(11):2993-7. doi: 10.1093/molbev/msr147. Epub 2011 Jun 1.

PMID:
21633113
[PubMed - indexed for MEDLINE]
Free Article
16.

The rocks and shallows of deep RNA sequencing: Examples in the Vibrio cholerae RNome.

Raabe CA, Hoe CH, Randau G, Brosius J, Tang TH, Rozhdestvensky TS.

RNA. 2011 Jul;17(7):1357-66. doi: 10.1261/rna.2682311. Epub 2011 May 24.

PMID:
21610211
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A novel web-based TinT application and the chronology of the Primate Alu retroposon activity.

Churakov G, Grundmann N, Kuritzin A, Brosius J, Makałowski W, Schmitz J.

BMC Evol Biol. 2010 Dec 2;10:376. doi: 10.1186/1471-2148-10-376.

PMID:
21126360
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Acknowledging conservation trade-offs and embracing complexity.

Hirsch PD, Adams WM, Brosius JP, Zia A, Bariola N, Dammert JL.

Conserv Biol. 2011 Apr;25(2):259-64. doi: 10.1111/j.1523-1739.2010.01608.x. Epub 2010 Nov 17.

PMID:
21091769
[PubMed - indexed for MEDLINE]
19.

Tracking marsupial evolution using archaic genomic retroposon insertions.

Nilsson MA, Churakov G, Sommer M, Tran NV, Zemann A, Brosius J, Schmitz J.

PLoS Biol. 2010 Jul 27;8(7):e1000436. doi: 10.1371/journal.pbio.1000436.

PMID:
20668664
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Retroposon insertions provide insights into deep lagomorph evolution.

Kriegs JO, Zemann A, Churakov G, Matzke A, Ohme M, Zischler H, Brosius J, Kryger U, Schmitz J.

Mol Biol Evol. 2010 Dec;27(12):2678-81. doi: 10.1093/molbev/msq162. Epub 2010 Jun 28.

PMID:
20584773
[PubMed - indexed for MEDLINE]
Free Article

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