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Results: 1 to 20 of 172

1.

The Persistent Contributions of RNA to Eukaryotic Gen(om)e Architecture and Cellular Function.

Brosius J.

Cold Spring Harb Perspect Biol. 2014 Jul 31. pii: a016089. doi: 10.1101/cshperspect.a016089. [Epub ahead of print]

PMID:
25081515
[PubMed - as supplied by publisher]
2.

Biases in small RNA deep sequencing data.

Raabe CA, Tang TH, Brosius J, Rozhdestvensky TS.

Nucleic Acids Res. 2014 Feb;42(3):1414-26. doi: 10.1093/nar/gkt1021. Epub 2013 Nov 5. Review.

PMID:
24198247
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Alternative processing as evolutionary mechanism for the origin of novel nonprotein coding RNAs.

Mo D, Raabe CA, Reinhardt R, Brosius J, Rozhdestvensky TS.

Genome Biol Evol. 2013;5(11):2061-71. doi: 10.1093/gbe/evt155.

PMID:
24132753
[PubMed - in process]
Free PMC Article
4.

The genome of a Mesozoic paleovirus reveals the evolution of hepatitis B viruses.

Suh A, Brosius J, Schmitz J, Kriegs JO.

Nat Commun. 2013;4:1791. doi: 10.1038/ncomms2798.

PMID:
23653203
[PubMed - indexed for MEDLINE]
5.

Retrophylogenomics place tarsiers on the evolutionary branch of anthropoids.

Hartig G, Churakov G, Warren WC, Brosius J, Makałowski W, Schmitz J.

Sci Rep. 2013;3:1756. doi: 10.1038/srep01756.

PMID:
23629008
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Ancestry of the Australian termitivorous numbat.

Zemann A, Churakov G, Donnellan S, Grützner F, Zhao F, Brosius J, Schmitz J.

Mol Biol Evol. 2013 May;30(5):1041-5. doi: 10.1093/molbev/mst032. Epub 2013 Feb 21.

PMID:
23429857
[PubMed - indexed for MEDLINE]
Free Article
7.

Genomic impact of eukaryotic transposable elements.

Arkhipova IR, Batzer MA, Brosius J, Feschotte C, Moran JV, Schmitz J, Jurka J.

Mob DNA. 2012 Nov 21;3(1):19. doi: 10.1186/1759-8753-3-19.

PMID:
23171443
[PubMed]
Free PMC Article
8.

A universal method for the study of CR1 retroposons in nonmodel bird genomes.

Suh A, Kriegs JO, Donnellan S, Brosius J, Schmitz J.

Mol Biol Evol. 2012 Oct;29(10):2899-903. Epub 2012 Apr 20.

PMID:
22522308
[PubMed - indexed for MEDLINE]
Free Article
9.

Retroposon insertion patterns of neoavian birds: strong evidence for an extensive incomplete lineage sorting era.

Matzke A, Churakov G, Berkes P, Arms EM, Kelsey D, Brosius J, Kriegs JO, Schmitz J.

Mol Biol Evol. 2012 Jun;29(6):1497-501. doi: 10.1093/molbev/msr319. Epub 2012 Jan 3.

PMID:
22319163
[PubMed - indexed for MEDLINE]
Free Article
10.

Mesozoic retroposons reveal parrots as the closest living relatives of passerine birds.

Suh A, Paus M, Kiefmann M, Churakov G, Franke FA, Brosius J, Kriegs JO, Schmitz J.

Nat Commun. 2011 Aug 23;2:443. doi: 10.1038/ncomms1448.

PMID:
21863010
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Exonization of transposed elements: A challenge and opportunity for evolution.

Schmitz J, Brosius J.

Biochimie. 2011 Nov;93(11):1928-34. doi: 10.1016/j.biochi.2011.07.014. Epub 2011 Jul 26. Review.

PMID:
21787833
[PubMed - indexed for MEDLINE]
12.

Retroposon insertions and the chronology of avian sex chromosome evolution.

Suh A, Kriegs JO, Brosius J, Schmitz J.

Mol Biol Evol. 2011 Nov;28(11):2993-7. doi: 10.1093/molbev/msr147. Epub 2011 Jun 1.

PMID:
21633113
[PubMed - indexed for MEDLINE]
Free Article
13.

The rocks and shallows of deep RNA sequencing: Examples in the Vibrio cholerae RNome.

Raabe CA, Hoe CH, Randau G, Brosius J, Tang TH, Rozhdestvensky TS.

RNA. 2011 Jul;17(7):1357-66. doi: 10.1261/rna.2682311. Epub 2011 May 24.

PMID:
21610211
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

A novel web-based TinT application and the chronology of the Primate Alu retroposon activity.

Churakov G, Grundmann N, Kuritzin A, Brosius J, Makałowski W, Schmitz J.

BMC Evol Biol. 2010 Dec 2;10:376. doi: 10.1186/1471-2148-10-376.

PMID:
21126360
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Acknowledging conservation trade-offs and embracing complexity.

Hirsch PD, Adams WM, Brosius JP, Zia A, Bariola N, Dammert JL.

Conserv Biol. 2011 Apr;25(2):259-64. doi: 10.1111/j.1523-1739.2010.01608.x. Epub 2010 Nov 17.

PMID:
21091769
[PubMed - indexed for MEDLINE]
16.

Tracking marsupial evolution using archaic genomic retroposon insertions.

Nilsson MA, Churakov G, Sommer M, Tran NV, Zemann A, Brosius J, Schmitz J.

PLoS Biol. 2010 Jul 27;8(7):e1000436. doi: 10.1371/journal.pbio.1000436.

PMID:
20668664
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Retroposon insertions provide insights into deep lagomorph evolution.

Kriegs JO, Zemann A, Churakov G, Matzke A, Ohme M, Zischler H, Brosius J, Kryger U, Schmitz J.

Mol Biol Evol. 2010 Dec;27(12):2678-81. doi: 10.1093/molbev/msq162. Epub 2010 Jun 28.

PMID:
20584773
[PubMed - indexed for MEDLINE]
Free Article
18.

Experimental identification and characterization of 97 novel npcRNA candidates in Salmonella enterica serovar Typhi.

Chinni SV, Raabe CA, Zakaria R, Randau G, Hoe CH, Zemann A, Brosius J, Tang TH, Rozhdestvensky TS.

Nucleic Acids Res. 2010 Sep;38(17):5893-908. doi: 10.1093/nar/gkq281. Epub 2010 May 11.

PMID:
20460466
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Identification of differentially expressed small non-protein-coding RNAs in Staphylococcus aureus displaying both the normal and the small-colony variant phenotype.

Abu-Qatouseh LF, Chinni SV, Seggewiss J, Proctor RA, Brosius J, Rozhdestvensky TS, Peters G, von Eiff C, Becker K.

J Mol Med (Berl). 2010 Jun;88(6):565-75. doi: 10.1007/s00109-010-0597-2. Epub 2010 Feb 12.

PMID:
20151104
[PubMed - indexed for MEDLINE]
20.

Rodent evolution: back to the root.

Churakov G, Sadasivuni MK, Rosenbloom KR, Huchon D, Brosius J, Schmitz J.

Mol Biol Evol. 2010 Jun;27(6):1315-26. doi: 10.1093/molbev/msq019. Epub 2010 Jan 25.

PMID:
20100942
[PubMed - indexed for MEDLINE]
Free Article

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