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Results: 1 to 20 of 57

1.

The core autophagy protein ATG4B is a potential biomarker and therapeutic target in CML stem/progenitor cells.

Rothe K, Lin H, Lin KB, Leung A, Wang HM, Malekesmaeili M, Brinkman RR, Forrest DL, Gorski SM, Jiang X.

Blood. 2014 Jun 5;123(23):3622-34. doi: 10.1182/blood-2013-07-516807. Epub 2014 Apr 22.

PMID:
24755409
[PubMed - indexed for MEDLINE]
2.

The logic of surveillance guidelines: an analysis of vaccine adverse event reports from an ontological perspective.

Courtot M, Brinkman RR, Ruttenberg A.

PLoS One. 2014 Mar 25;9(3):e92632. doi: 10.1371/journal.pone.0092632. eCollection 2014.

PMID:
24667848
[PubMed - in process]
Free PMC Article
3.

Enhanced flowType/RchyOptimyx: a BioConductor pipeline for discovery in high-dimensional cytometry data.

O'Neill K, Jalali A, Aghaeepour N, Hoos H, Brinkman RR.

Bioinformatics. 2014 May 1;30(9):1329-30. doi: 10.1093/bioinformatics/btt770. Epub 2014 Jan 8.

PMID:
24407226
[PubMed - indexed for MEDLINE]
4.

The luminal progenitor compartment of the normal human mammary gland constitutes a unique site of telomere dysfunction.

Kannan N, Huda N, Tu L, Droumeva R, Aubert G, Chavez E, Brinkman RR, Lansdorp P, Emerman J, Abe S, Eaves C, Gilley D.

Stem Cell Reports. 2013 Jun 4;1(1):28-37. doi: 10.1016/j.stemcr.2013.04.003. eCollection 2013.

PMID:
24052939
[PubMed]
Free PMC Article
5.

Computational analysis optimizes the flow cytometric evaluation for lymphoma.

Craig FE, Brinkman RR, Ten Eyck S, Aghaeepour N.

Cytometry B Clin Cytom. 2014 Jan;86(1):18-24. doi: 10.1002/cyto.b.21115. Epub 2013 Sep 3.

PMID:
24002786
[PubMed - indexed for MEDLINE]
6.

Computational analysis optimizes the flow cytometric evaluation for lymphoma.

Craig FE, Brinkman RR, Eyck ST, Aghaeepour N.

Cytometry B Clin Cytom. 2013 Jul 19. doi: 10.1002/cytob.21115. [Epub ahead of print]

PMID:
23873623
[PubMed - as supplied by publisher]
7.

Integration of lyoplate based flow cytometry and computational analysis for standardized immunological biomarker discovery.

Villanova F, Di Meglio P, Inokuma M, Aghaeepour N, Perucha E, Mollon J, Nomura L, Hernandez-Fuentes M, Cope A, Prevost AT, Heck S, Maino V, Lord G, Brinkman RR, Nestle FO.

PLoS One. 2013 Jul 3;8(7):e65485. doi: 10.1371/journal.pone.0065485. Print 2013.

PMID:
23843942
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

GenePattern flow cytometry suite.

Spidlen J, Barsky A, Breuer K, Carr P, Nazaire MD, Hill BA, Qian Y, Liefeld T, Reich M, Mesirov JP, Wilkinson P, Scheuermann RH, Sekaly RP, Brinkman RR.

Source Code Biol Med. 2013 Jul 3;8(1):14. doi: 10.1186/1751-0473-8-14.

PMID:
23822732
[PubMed]
Free PMC Article
9.

Scoring relevancy of features based on combinatorial analysis of Lasso with application to lymphoma diagnosis.

Zare H, Haffari G, Gupta A, Brinkman RR.

BMC Genomics. 2013;14 Suppl 1:S14. doi: 10.1186/1471-2164-14-S1-S14. Epub 2013 Jan 21.

PMID:
23369194
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

RchyOptimyx: cellular hierarchy optimization for flow cytometry.

Aghaeepour N, Jalali A, O'Neill K, Chattopadhyay PK, Roederer M, Hoos HH, Brinkman RR.

Cytometry A. 2012 Dec;81(12):1022-30. doi: 10.1002/cyto.a.22209. Epub 2012 Oct 8.

PMID:
23044634
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The phenotypic distribution and functional profile of tuberculin-specific CD4 T-cells characterizes different stages of TB infection.

Streitz M, Fuhrmann S, Thomas D, Cheek E, Nomura L, Maecker H, Martus P, Aghaeepour N, Brinkman RR, Volk HD, Kern F.

Cytometry B Clin Cytom. 2012 Nov;82(6):360-8. doi: 10.1002/cyto.b.21041. Epub 2012 Sep 7.

PMID:
22961735
[PubMed - indexed for MEDLINE]
Free Article
12.

FlowRepository: a resource of annotated flow cytometry datasets associated with peer-reviewed publications.

Spidlen J, Breuer K, Rosenberg C, Kotecha N, Brinkman RR.

Cytometry A. 2012 Sep;81(9):727-31. doi: 10.1002/cyto.a.22106. Epub 2012 Aug 6. No abstract available.

PMID:
22887982
[PubMed - indexed for MEDLINE]
Free Article
13.

B cells with high side scatter parameter by flow cytometry correlate with inferior survival in diffuse large B-cell lymphoma.

Bashashati A, Johnson NA, Khodabakhshi AH, Whiteside MD, Zare H, Scott DW, Lo K, Gottardo R, Brinkman FS, Connors JM, Slack GW, Gascoyne RD, Weng AP, Brinkman RR.

Am J Clin Pathol. 2012 May;137(5):805-14. doi: 10.1309/AJCPGR8BG4JDVOWR.

PMID:
22523221
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Hematopoietic stem cell subtypes expand differentially during development and display distinct lymphopoietic programs.

Benz C, Copley MR, Kent DG, Wohrer S, Cortes A, Aghaeepour N, Ma E, Mader H, Rowe K, Day C, Treloar D, Brinkman RR, Eaves CJ.

Cell Stem Cell. 2012 Mar 2;10(3):273-83. doi: 10.1016/j.stem.2012.02.007.

PMID:
22385655
[PubMed - indexed for MEDLINE]
Free Article
15.

Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays.

Aghaeepour N, Chattopadhyay PK, Ganesan A, O'Neill K, Zare H, Jalali A, Hoos HH, Roederer M, Brinkman RR.

Bioinformatics. 2012 Apr 1;28(7):1009-16. doi: 10.1093/bioinformatics/bts082. Epub 2012 Feb 29.

PMID:
22383736
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Distinct but phenotypically heterogeneous human cell populations produce rapid recovery of platelets and neutrophils after transplantation.

Cheung AM, Leung D, Rostamirad S, Dhillon K, Miller PH, Droumeva R, Brinkman RR, Hogge D, Roy DC, Eaves CJ.

Blood. 2012 Apr 12;119(15):3431-9. doi: 10.1182/blood-2011-12-398024. Epub 2012 Feb 28.

PMID:
22374695
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

FCS 3.1 Implementation guidance.

Bray C, Spidlen J, Brinkman RR.

Cytometry A. 2012 Jun;81(6):523-6. doi: 10.1002/cyto.a.22018. Epub 2012 Jan 25.

PMID:
22278913
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Automated analysis of multidimensional flow cytometry data improves diagnostic accuracy between mantle cell lymphoma and small lymphocytic lymphoma.

Zare H, Bashashati A, Kridel R, Aghaeepour N, Haffari G, Connors JM, Gascoyne RD, Gupta A, Brinkman RR, Weng AP.

Am J Clin Pathol. 2012 Jan;137(1):75-85. doi: 10.1309/AJCPMMLQ67YOMGEW.

PMID:
22180480
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Flow cytometry data standards.

Spidlen J, Shooshtari P, Kollmann TR, Brinkman RR.

BMC Res Notes. 2011 Mar 7;4:50. doi: 10.1186/1756-0500-4-50.

PMID:
21385382
[PubMed]
Free PMC Article
20.

Rapid cell population identification in flow cytometry data.

Aghaeepour N, Nikolic R, Hoos HH, Brinkman RR.

Cytometry A. 2011 Jan;79(1):6-13. doi: 10.1002/cyto.a.21007.

PMID:
21182178
[PubMed - indexed for MEDLINE]
Free PMC Article

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