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Items: 9

1.

De novo transcriptome assembly of the grapevine phylloxera allows identification of genes differentially expressed between leaf- and root-feeding forms.

Rispe C, Legeai F, Papura D, Bretaudeau A, Hudaverdian S, Le Trionnaire G, Tagu D, Jaquiéry J, Delmotte F.

BMC Genomics. 2016 Mar 11;17(1):219. doi: 10.1186/s12864-016-2530-8.

2.

Tools and data services registry: a community effort to document bioinformatics resources.

Ison J, Rapacki K, Ménager H, Kalaš M, Rydza E, Chmura P, Anthon C, Beard N, Berka K, Bolser D, Booth T, Bretaudeau A, Brezovsky J, Casadio R, Cesareni G, Coppens F, Cornell M, Cuccuru G, Davidsen K, Vedova GD, Dogan T, Doppelt-Azeroual O, Emery L, Gasteiger E, Gatter T, Goldberg T, Grosjean M, Grüning B, Helmer-Citterich M, Ienasescu H, Ioannidis V, Jespersen MC, Jimenez R, Juty N, Juvan P, Koch M, Laibe C, Li JW, Licata L, Mareuil F, Mičetić I, Friborg RM, Moretti S, Morris C, Möller S, Nenadic A, Peterson H, Profiti G, Rice P, Romano P, Roncaglia P, Saidi R, Schafferhans A, Schwämmle V, Smith C, Sperotto MM, Stockinger H, Vařeková RS, Tosatto SC, de la Torre V, Uva P, Via A, Yachdav G, Zambelli F, Vriend G, Rost B, Parkinson H, Løngreen P, Brunak S.

Nucleic Acids Res. 2016 Jan 4;44(D1):D38-47. doi: 10.1093/nar/gkv1116. Epub 2015 Nov 3.

3.

BioMAJ2Galaxy: automatic update of reference data in Galaxy using BioMAJ.

Bretaudeau A, Monjeaud C, Le Bras Y, Legeai F, Collin O.

Gigascience. 2015 May 9;4:22. doi: 10.1186/s13742-015-0063-8. eCollection 2015.

4.

Establishment and analysis of a reference transcriptome for Spodoptera frugiperda.

Legeai F, Gimenez S, Duvic B, Escoubas JM, Gosselin Grenet AS, Blanc F, Cousserans F, Séninet I, Bretaudeau A, Mutuel D, Girard PA, Monsempes C, Magdelenat G, Hilliou F, Feyereisen R, Ogliastro M, Volkoff AN, Jacquin-Joly E, d'Alençon E, Nègre N, Fournier P.

BMC Genomics. 2014 Aug 23;15:704. doi: 10.1186/1471-2164-15-704.

5.

The duplicated genes database: identification and functional annotation of co-localised duplicated genes across genomes.

Ouedraogo M, Bettembourg C, Bretaudeau A, Sallou O, Diot C, Demeure O, Lecerf F.

PLoS One. 2012;7(11):e50653. doi: 10.1371/journal.pone.0050653. Epub 2012 Nov 28.

6.

CyanoLyase: a database of phycobilin lyase sequences, motifs and functions.

Bretaudeau A, Coste F, Humily F, Garczarek L, Le Corguillé G, Six C, Ratin M, Collin O, Schluchter WM, Partensky F.

Nucleic Acids Res. 2013 Jan;41(Database issue):D396-401. doi: 10.1093/nar/gks1091. Epub 2012 Nov 21.

7.

PHYMYCO-DB: a curated database for analyses of fungal diversity and evolution.

Mahé S, Duhamel M, Le Calvez T, Guillot L, Sarbu L, Bretaudeau A, Collin O, Dufresne A, Kiers ET, Vandenkoornhuyse P.

PLoS One. 2012;7(9):e43117. doi: 10.1371/journal.pone.0043117. Epub 2012 Sep 13.

8.

Seqcrawler: biological data indexing and browsing platform.

Sallou O, Bretaudeau A, Roult A.

BMC Bioinformatics. 2012 Jul 24;13:175. doi: 10.1186/1471-2105-13-175.

9.

AnnotQTL: a new tool to gather functional and comparative information on a genomic region.

Lecerf F, Bretaudeau A, Sallou O, Desert C, Blum Y, Lagarrigue S, Demeure O.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W328-33. doi: 10.1093/nar/gkr361. Epub 2011 May 19.

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