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Results: 12

1.

Discovery and expression analysis of alternative splicing events conserved among plant SR proteins.

Rauch HB, Patrick TL, Klusman KM, Battistuzzi FU, Mei W, Brendel VP, Lal SK.

Mol Biol Evol. 2014 Mar;31(3):605-13. doi: 10.1093/molbev/mst238. Epub 2013 Dec 19.

PMID:
24356560
[PubMed - in process]
2.

Single nucleotide polymorphisms of human STING can affect innate immune response to cyclic dinucleotides.

Yi G, Brendel VP, Shu C, Li P, Palanathan S, Cheng Kao C.

PLoS One. 2013 Oct 21;8(10):e77846. doi: 10.1371/journal.pone.0077846. eCollection 2013.

PMID:
24204993
[PubMed - in process]
Free PMC Article
3.

ParsEval: parallel comparison and analysis of gene structure annotations.

Standage DS, Brendel VP.

BMC Bioinformatics. 2012 Aug 1;13:187. doi: 10.1186/1471-2105-13-187.

PMID:
22852583
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target prediction.

Doyle EL, Booher NJ, Standage DS, Voytas DF, Brendel VP, Vandyk JK, Bogdanove AJ.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W117-22. doi: 10.1093/nar/gks608. Epub 2012 Jun 12.

PMID:
22693217
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

Bogdanove AJ, Koebnik R, Lu H, Furutani A, Angiuoli SV, Patil PB, Van Sluys MA, Ryan RP, Meyer DF, Han SW, Aparna G, Rajaram M, Delcher AL, Phillippy AM, Puiu D, Schatz MC, Shumway M, Sommer DD, Trapnell C, Benahmed F, Dimitrov G, Madupu R, Radune D, Sullivan S, Jha G, Ishihara H, Lee SW, Pandey A, Sharma V, Sriariyanun M, Szurek B, Vera-Cruz CM, Dorman KS, Ronald PC, Verdier V, Dow JM, Sonti RV, Tsuge S, Brendel VP, Rabinowicz PD, Leach JE, White FF, Salzberg SL.

J Bacteriol. 2011 Oct;193(19):5450-64. doi: 10.1128/JB.05262-11. Epub 2011 Jul 22.

PMID:
21784931
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The BioExtract Server: a web-based bioinformatic workflow platform.

Lushbough CM, Jennewein DM, Brendel VP.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W528-32. doi: 10.1093/nar/gkr286. Epub 2011 May 5.

PMID:
21546552
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

An overview of the BioExtract Server: a distributed, Web-based system for genomic analysis.

Lushbough CM, Brendel VP.

Adv Exp Med Biol. 2010;680:361-9. doi: 10.1007/978-1-4419-5913-3_41.

PMID:
20865520
[PubMed - indexed for MEDLINE]
8.

Genome-wide distribution of transposed Dissociation elements in maize.

Vollbrecht E, Duvick J, Schares JP, Ahern KR, Deewatthanawong P, Xu L, Conrad LJ, Kikuchi K, Kubinec TA, Hall BD, Weeks R, Unger-Wallace E, Muszynski M, Brendel VP, Brutnell TP.

Plant Cell. 2010 Jun;22(6):1667-85. doi: 10.1105/tpc.109.073452. Epub 2010 Jun 25.

PMID:
20581308
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Common introns within orthologous genes: software and application to plants.

Wilkerson MD, Ru Y, Brendel VP.

Brief Bioinform. 2009 Nov;10(6):631-44. doi: 10.1093/bib/bbp051.

PMID:
19933210
[PubMed - indexed for MEDLINE]
Free Article
10.

Regional mutagenesis using Dissociation in maize.

Ahern KR, Deewatthanawong P, Schares J, Muszynski M, Weeks R, Vollbrecht E, Duvick J, Brendel VP, Brutnell TP.

Methods. 2009 Nov;49(3):248-54. doi: 10.1016/j.ymeth.2009.04.009. Epub 2009 Apr 24.

PMID:
19394430
[PubMed - indexed for MEDLINE]
11.

MaizeGDB becomes 'sequence-centric'.

Sen TZ, Andorf CM, Schaeffer ML, Harper LC, Sparks ME, Duvick J, Brendel VP, Cannon E, Campbell DA, Lawrence CJ.

Database (Oxford). 2009;2009:bap020. doi: 10.1093/database/bap020. Epub 2009 Dec 7.

PMID:
21847242
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Pairwise statistical significance and empirical determination of effective gap opening penalties for protein local sequence alignment.

Agrawal A, Brendel VP, Huang X.

Int J Comput Biol Drug Des. 2008;1(4):347-67. Review.

PMID:
20063463
[PubMed - indexed for MEDLINE]

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