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Results: 1 to 20 of 148

1.

MetAssign: probabilistic annotation of metabolites from LC-MS data using a Bayesian clustering approach.

Daly R, Rogers S, Wandy J, Jankevics A, Burgess KE, Breitling R.

Bioinformatics. 2014 Jun 9. pii: btu370. [Epub ahead of print]

PMID:
24916385
[PubMed - as supplied by publisher]
Free Article
2.

The silicon trypanosome: a test case of iterative model extension in systems biology.

Achcar F, Fadda A, Haanstra JR, Kerkhoven EJ, Kim DH, Leroux AE, Papamarkou T, Rojas F, Bakker BM, Barrett MP, Clayton C, Girolami M, Krauth-Siegel RL, Matthews KR, Breitling R.

Adv Microb Physiol. 2014;64:115-43. doi: 10.1016/B978-0-12-800143-1.00003-8.

PMID:
24797926
[PubMed - in process]
3.

SecA is required for membrane targeting of the cell division protein DivIVA in vivo.

Halbedel S, Kawai M, Breitling R, Hamoen LW.

Front Microbiol. 2014 Feb 14;5:58. doi: 10.3389/fmicb.2014.00058. eCollection 2014.

PMID:
24592260
[PubMed]
Free PMC Article
4.

Stable isotope-labeling studies in metabolomics: new insights into structure and dynamics of metabolic networks.

Chokkathukalam A, Kim DH, Barrett MP, Breitling R, Creek DJ.

Bioanalysis. 2014 Feb;6(4):511-24. doi: 10.4155/bio.13.348.

PMID:
24568354
[PubMed - in process]
Free PMC Article
5.

Phosphoenolpyruvate carboxylase identified as a key enzyme in erythrocytic Plasmodium falciparum carbon metabolism.

Storm J, Sethia S, Blackburn GJ, Chokkathukalam A, Watson DG, Breitling R, Coombs GH, Müller S.

PLoS Pathog. 2014 Jan;10(1):e1003876. doi: 10.1371/journal.ppat.1003876. Epub 2014 Jan 16.

PMID:
24453970
[PubMed - in process]
Free PMC Article
6.

Steps towards the synthetic biology of polyketide biosynthesis.

Cummings M, Breitling R, Takano E.

FEMS Microbiol Lett. 2014 Feb;351(2):116-25. doi: 10.1111/1574-6968.12365. Epub 2014 Jan 7.

PMID:
24372666
[PubMed - in process]
7.

Handling uncertainty in dynamic models: the pentose phosphate pathway in Trypanosoma brucei.

Kerkhoven EJ, Achcar F, Alibu VP, Burchmore RJ, Gilbert IH, Trybiło M, Driessen NN, Gilbert D, Breitling R, Bakker BM, Barrett MP.

PLoS Comput Biol. 2013 Dec;9(12):e1003371. doi: 10.1371/journal.pcbi.1003371. Epub 2013 Dec 5.

PMID:
24339766
[PubMed - in process]
Free PMC Article
8.

Relationships between Cargo, Cell Penetrating Peptides and Cell Type for Uptake of Non-Covalent Complexes into Live Cells.

Keller AA, Mussbach F, Breitling R, Hemmerich P, Schaefer B, Lorkowski S, Reissmann S.

Pharmaceuticals (Basel). 2013 Feb 6;6(2):184-203. doi: 10.3390/ph6020184.

PMID:
24275947
[PubMed]
Free PMC Article
9.

Transduction of proteins into leishmania tarentolae by formation of non-covalent complexes with cell-penetrating peptides.

Keller AA, Breitling R, Hemmerich P, Kappe K, Braun M, Wittig B, Schaefer B, Lorkowski S, Reissmann S.

J Cell Biochem. 2014 Feb;115(2):243-52. doi: 10.1002/jcb.24654.

PMID:
24038170
[PubMed - in process]
10.

Metabolic adaptations of Leishmania donovani in relation to differentiation, drug resistance, and drug pressure.

Berg M, Vanaerschot M, Jankevics A, Cuypers B, Maes I, Mukherjee S, Khanal B, Rijal S, Roy S, Opperdoes F, Breitling R, Dujardin JC.

Mol Microbiol. 2013 Oct;90(2):428-42. doi: 10.1111/mmi.12374. Epub 2013 Sep 11.

PMID:
24020363
[PubMed - indexed for MEDLINE]
11.

Natural products: tools and more special issue.

Takano E, Breitling R.

ACS Synth Biol. 2013 Jul 19;2(7):352-3. doi: 10.1021/sb400063n. No abstract available.

PMID:
23865762
[PubMed - indexed for MEDLINE]
12.

Explicit consideration of topological and parameter uncertainty gives new insights into a well-established model of glycolysis.

Achcar F, Barrett MP, Breitling R.

FEBS J. 2013 Sep;280(18):4640-51. doi: 10.1111/febs.12436. Epub 2013 Aug 19.

PMID:
23865459
[PubMed - indexed for MEDLINE]
13.

antiSMASH 2.0--a versatile platform for genome mining of secondary metabolite producers.

Blin K, Medema MH, Kazempour D, Fischbach MA, Breitling R, Takano E, Weber T.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W204-12. doi: 10.1093/nar/gkt449. Epub 2013 Jun 3.

PMID:
23737449
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Modeling challenges in the synthetic biology of secondary metabolism.

Breitling R, Achcar F, Takano E.

ACS Synth Biol. 2013 Jul 19;2(7):373-8. doi: 10.1021/sb4000228. Epub 2013 May 20. Review.

PMID:
23659212
[PubMed - indexed for MEDLINE]
15.

Design-based re-engineering of biosynthetic gene clusters: plug-and-play in practice.

Frasch HJ, Medema MH, Takano E, Breitling R.

Curr Opin Biotechnol. 2013 Dec;24(6):1144-50. doi: 10.1016/j.copbio.2013.03.006. Epub 2013 Mar 27. Review.

PMID:
23540422
[PubMed - indexed for MEDLINE]
16.

Detecting sequence homology at the gene cluster level with MultiGeneBlast.

Medema MH, Takano E, Breitling R.

Mol Biol Evol. 2013 May;30(5):1218-23. doi: 10.1093/molbev/mst025. Epub 2013 Feb 14.

PMID:
23412913
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The exact probability distribution of the rank product statistics for replicated experiments.

Eisinga R, Breitling R, Heskes T.

FEBS Lett. 2013 Mar 18;587(6):677-82. doi: 10.1016/j.febslet.2013.01.037. Epub 2013 Feb 8.

PMID:
23395607
[PubMed - indexed for MEDLINE]
Free Article
18.

Chemical and enzymatic characterization of recombinant rabbit muscle pyruvate kinase.

Boehme C, Bieber F, Linnemann J, Breitling R, Lorkowski S, Reissmann S.

Biol Chem. 2013 May;394(5):695-701. doi: 10.1515/hsz-2012-0334.

PMID:
23324382
[PubMed - indexed for MEDLINE]
19.

Metabolomics for secondary metabolite research.

Breitling R, Ceniceros A, Jankevics A, Takano E.

Metabolites. 2013 Nov 11;3(4):1076-83. doi: 10.3390/metabo3041076.

PMID:
24958266
[PubMed]
Free PMC Article
20.

LC-MS metabolomics from study design to data-analysis - using a versatile pathogen as a test case.

Berg M, Vanaerschot M, Jankevics A, Cuypers B, Breitling R, Dujardin JC.

Comput Struct Biotechnol J. 2013 Feb 6;4:e201301002. doi: 10.5936/csbj.201301002. eCollection 2013. Review.

PMID:
24688684
[PubMed]
Free PMC Article

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