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Results: 1 to 20 of 74

1.

A range finding protocol to support design for transcriptomics experimentation: examples of in-vitro and in-vivo murine UV exposure.

Bruning O, Rodenburg W, van Oostrom CT, Jonker MJ, de Jong M, Dekker RJ, Rauwerda H, Ensink WA, de Vries A, Breit TM.

PLoS One. 2014 May 13;9(5):e97089. doi: 10.1371/journal.pone.0097089. eCollection 2014.

PMID:
24823911
[PubMed - in process]
Free PMC Article
2.

A day and night difference in the response of the hepatic transcriptome to cyclophosphamide treatment.

Van Dycke KC, Nijman RM, Wackers PF, Jonker MJ, Rodenburg W, van Oostrom CT, Salvatori DC, Breit TM, van Steeg H, Luijten M, van der Horst GT.

Arch Toxicol. 2014 May 13. [Epub ahead of print]

PMID:
24819615
[PubMed - as supplied by publisher]
3.

Absence/presence calling in microarray-based CGH experiments with non-model organisms.

Jonker MJ, de Leeuw WC, Marinković M, Wittink FR, Rauwerda H, Bruning O, Ensink WA, Fluit AC, Boel CH, Jong Md, Breit TM.

Nucleic Acids Res. 2014;42(11):e94. doi: 10.1093/nar/gku343. Epub 2014 Apr 25.

PMID:
24771343
[PubMed - in process]
Free PMC Article
4.

In vivo murine hepatic microRNA and mRNA expression signatures predicting the (non-)genotoxic carcinogenic potential of chemicals.

Melis JP, Derks KW, Pronk TE, Wackers P, Schaap MM, Zwart E, van Ijcken WF, Jonker MJ, Breit TM, Pothof J, van Steeg H, Luijten M.

Arch Toxicol. 2014 Apr;88(4):1023-34. doi: 10.1007/s00204-013-1189-z. Epub 2014 Jan 5.

PMID:
24390151
[PubMed - in process]
5.

Aging on a different scale--chronological versus pathology-related aging.

Melis JP, Jonker MJ, Vijg J, Hoeijmakers JH, Breit TM, van Steeg H.

Aging (Albany NY). 2013 Oct;5(10):782-8.

PMID:
24131799
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Life spanning murine gene expression profiles in relation to chronological and pathological aging in multiple organs.

Jonker MJ, Melis JP, Kuiper RV, van der Hoeven TV, Wackers PF, Robinson J, van der Horst GT, Dollé ME, Vijg J, Breit TM, Hoeijmakers JH, van Steeg H.

Aging Cell. 2013 Oct;12(5):901-9. doi: 10.1111/acel.12118. Epub 2013 Jul 14.

PMID:
23795901
[PubMed - indexed for MEDLINE]
7.

Rifampicin-induced transcriptome response in rifampicin-resistant Mycobacterium tuberculosis.

de Knegt GJ, Bruning O, ten Kate MT, de Jong M, van Belkum A, Endtz HP, Breit TM, Bakker-Woudenberg IA, de Steenwinkel JE.

Tuberculosis (Edinb). 2013 Jan;93(1):96-101. doi: 10.1016/j.tube.2012.10.013. Epub 2012 Nov 22.

PMID:
23182912
[PubMed - indexed for MEDLINE]
8.

Combining next-generation sequencing and microarray technology into a transcriptomics approach for the non-model organism Chironomus riparius.

Marinković M, de Leeuw WC, de Jong M, Kraak MH, Admiraal W, Breit TM, Jonker MJ.

PLoS One. 2012;7(10):e48096. doi: 10.1371/journal.pone.0048096. Epub 2012 Oct 25.

PMID:
23133553
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Gene expression patterns and life cycle responses of toxicant-exposed chironomids.

Marinković M, de Leeuw WC, Ensink WA, de Jong M, Breit TM, Admiraal W, Kraak MH, Jonker MJ.

Environ Sci Technol. 2012 Nov 20;46(22):12679-86. doi: 10.1021/es3033617. Epub 2012 Nov 9.

PMID:
23126638
[PubMed - indexed for MEDLINE]
10.

Comparison of Timothy grass pollen extract- and single major allergen-induced gene expression and mediator release in airway epithelial cells: a meta-analysis.

Röschmann KI, van Kuijen AM, Luiten S, Jonker MJ, Breit TM, Fokkens WJ, Petersen A, van Drunen CM.

Clin Exp Allergy. 2012 Oct;42(10):1479-90. doi: 10.1111/j.1365-2222.2012.04033.x.

PMID:
22994345
[PubMed - indexed for MEDLINE]
11.

Dissecting modes of action of non-genotoxic carcinogens in primary mouse hepatocytes.

Schaap MM, Zwart EP, Wackers PF, Huijskens I, van de Water B, Breit TM, van Steeg H, Jonker MJ, Luijten M.

Arch Toxicol. 2012 Nov;86(11):1717-27. doi: 10.1007/s00204-012-0883-6. Epub 2012 Jun 19.

PMID:
22710402
[PubMed - indexed for MEDLINE]
12.

Transcriptome analysis of a long-lived natural Drosophila variant: a prominent role of stress- and reproduction-genes in lifespan extension.

Doroszuk A, Jonker MJ, Pul N, Breit TM, Zwaan BJ.

BMC Genomics. 2012 May 4;13:167. doi: 10.1186/1471-2164-13-167.

PMID:
22559237
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Purified Timothy grass pollen major allergen Phl p 1 may contribute to the modulation of allergic responses through a pleiotropic induction of cytokines and chemokines from airway epithelial cells.

Röschmann KI, van Kuijen AM, Luiten S, Jonker MJ, Breit TM, Fokkens WJ, Petersen A, van Drunen CM.

Clin Exp Immunol. 2012 Mar;167(3):413-21. doi: 10.1111/j.1365-2249.2011.04522.x.

PMID:
22288584
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Human testis-derived embryonic stem cell-like cells are not pluripotent, but possess potential of mesenchymal progenitors.

Chikhovskaya JV, Jonker MJ, Meissner A, Breit TM, Repping S, van Pelt AM.

Hum Reprod. 2012 Jan;27(1):210-21. doi: 10.1093/humrep/der383. Epub 2011 Nov 15.

PMID:
22095788
[PubMed - indexed for MEDLINE]
Free Article
15.

RNA isolation for transcriptomics of human and mouse small skin biopsies.

Bruning O, Rodenburg W, Radonic T, Zwinderman AH, de Vries A, Breit TM, de Jong M.

BMC Res Notes. 2011 Oct 24;4:438. doi: 10.1186/1756-0500-4-438.

PMID:
22023775
[PubMed]
Free PMC Article
16.

Single cell transcriptomics of neighboring hyphae of Aspergillus niger.

de Bekker C, Bruning O, Jonker MJ, Breit TM, Wösten HA.

Genome Biol. 2011 Aug 4;12(8):R71. doi: 10.1186/gb-2011-12-8-r71.

PMID:
21816052
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Gene expression profiling in a mouse model identifies fetal liver- and placenta-derived potential biomarkers for Down Syndrome screening.

Pennings JL, Rodenburg W, Imholz S, Koster MP, van Oostrom CT, Breit TM, Schielen PC, de Vries A.

PLoS One. 2011 Apr 14;6(4):e18866. doi: 10.1371/journal.pone.0018866.

PMID:
21533146
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Timothy grass pollen extract-induced gene expression and signalling pathways in airway epithelial cells.

Röschmann KI, Luiten S, Jonker MJ, Breit TM, Fokkens WJ, Petersen A, van Drunen CM.

Clin Exp Allergy. 2011 Jun;41(6):830-41. doi: 10.1111/j.1365-2222.2011.03713.x. Epub 2011 Apr 8.

PMID:
21477208
[PubMed - indexed for MEDLINE]
19.

Interorgan coordination of the murine adaptive response to fasting.

Hakvoort TB, Moerland PD, Frijters R, Sokolović A, Labruyère WT, Vermeulen JL, Ver Loren van Themaat E, Breit TM, Wittink FR, van Kampen AH, Verhoeven AJ, Lamers WH, Sokolović M.

J Biol Chem. 2011 May 6;286(18):16332-43. doi: 10.1074/jbc.M110.216986. Epub 2011 Mar 10.

PMID:
21393243
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Serious complications in gene-expression studies with stress perturbation: An example of UV-exposed p53-mutant mouse embryonic fibroblasts.

Bruning O, Yuan X, Rodenburg W, Bruins W, van Oostrom CT, Rauwerda H, Wittink FR, Jonker MJ, de Vries A, Breit TM.

Transcription. 2010 Nov;1(3):159-164. Epub 2010 Aug 30.

PMID:
21326892
[PubMed]
Free PMC Article

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