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Results: 1 to 20 of 58

1.

The evolution of peafowl and other taxa with ocelli (eyespots): a phylogenomic approach.

Sun K, Meiklejohn KA, Faircloth BC, Glenn TC, Braun EL, Kimball RT.

Proc Biol Sci. 2014 Sep 7;281(1790). pii: 20140823. doi: 10.1098/rspb.2014.0823.

PMID:
25030982
[PubMed - in process]
Free Article
2.

Incongruence among different mitochondrial regions: A case study using complete mitogenomes.

Meiklejohn KA, Danielson MJ, Faircloth BC, Glenn TC, Braun EL, Kimball RT.

Mol Phylogenet Evol. 2014 Jun 12;78C:314-323. doi: 10.1016/j.ympev.2014.06.003. [Epub ahead of print]

PMID:
24929245
[PubMed - as supplied by publisher]
3.

Does more sequence data improve estimates of galliform phylogeny? Analyses of a rapid radiation using a complete data matrix.

Kimball RT, Braun EL.

PeerJ. 2014 Apr 22;2:e361. doi: 10.7717/peerj.361. eCollection 2014.

PMID:
24795852
[PubMed]
Free PMC Article
4.

Identifying localized biases in large datasets: a case study using the avian tree of life.

Kimball RT, Wang N, Heimer-McGinn V, Ferguson C, Braun EL.

Mol Phylogenet Evol. 2013 Dec;69(3):1021-32. doi: 10.1016/j.ympev.2013.05.029. Epub 2013 Jun 20.

PMID:
23791948
[PubMed - indexed for MEDLINE]
5.

Assessing phylogenetic relationships among galliformes: a multigene phylogeny with expanded taxon sampling in Phasianidae.

Wang N, Kimball RT, Braun EL, Liang B, Zhang Z.

PLoS One. 2013 May 31;8(5):e64312. doi: 10.1371/journal.pone.0064312. Print 2013.

PMID:
23741315
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.

Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, Bruneau BG, Buck LT, Capel B, Castoe TA, Czerwinski M, Delehaunty KD, Edwards SV, Fronick CC, Fujita MK, Fulton L, Graves TA, Green RE, Haerty W, Hariharan R, Hernandez O, Hillier LW, Holloway AK, Janes D, Janzen FJ, Kandoth C, Kong L, de Koning AJ, Li Y, Literman R, McGaugh SE, Mork L, O'Laughlin M, Paitz RT, Pollock DD, Ponting CP, Radhakrishnan S, Raney BJ, Richman JM, St John J, Schwartz T, Sethuraman A, Spinks PQ, Storey KB, Thane N, Vinar T, Zimmerman LM, Warren WC, Mardis ER, Wilson RK.

Genome Biol. 2013 Mar 28;14(3):R28. [Epub ahead of print]

PMID:
23537068
[PubMed - as supplied by publisher]
Free PMC Article
7.

Report from the first snake genomics and integrative biology meeting.

Castoe TA, Braun EL, Bronikowski AM, Cox CL, Rabosky AR, Jason de Koning AP, Dobry J, Fujita MK, Giorgianni MW, Hargreaves A, Henkel CV, Mackessy SP, O'Meally D, Rokyta DR, Secor SM, Streicher JW, Wray KP, Yokoyama KD, Pollock DD.

Stand Genomic Sci. 2012 Oct 10;7(1):150-2. doi: 10.4056/sigs.3106480. Epub 2012 Sep 24.

PMID:
23451292
[PubMed]
Free PMC Article
8.

Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals.

Yuri T, Kimball RT, Harshman J, Bowie RC, Braun MJ, Chojnowski JL, Han KL, Hackett SJ, Huddleston CJ, Moore WS, Reddy S, Sheldon FH, Steadman DW, Witt CC, Braun EL.

Biology (Basel). 2013 Mar 13;2(1):419-44. doi: 10.3390/biology2010419.

PMID:
24832669
[PubMed]
Free PMC Article
9.

Ratite nonmonophyly: independent evidence from 40 novel Loci.

Smith JV, Braun EL, Kimball RT.

Syst Biol. 2013 Jan 1;62(1):35-49. doi: 10.1093/sysbio/sys067. Epub 2012 Jul 24.

PMID:
22831877
[PubMed - indexed for MEDLINE]
10.

An unbiased approach to identify genes involved in development in a turtle with temperature-dependent sex determination.

Chojnowski JL, Braun EL.

BMC Genomics. 2012 Jul 15;13:308. doi: 10.1186/1471-2164-13-308.

PMID:
22793670
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Assessing parameter identifiability in phylogenetic models using data cloning.

Ponciano JM, Burleigh JG, Braun EL, Taper ML.

Syst Biol. 2012 Dec 1;61(6):955-72. doi: 10.1093/sysbio/sys055. Epub 2012 May 30.

PMID:
22649181
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes.

St John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, Drew JC, Edwards SV, Faircloth BC, Fujita MK, Greenwold MJ, Hoffmann FG, Howard JM, Iguchi T, Janes DE, Khan SY, Kohno S, de Koning AJ, Lance SL, McCarthy FM, McCormack JE, Merchant ME, Peterson DG, Pollock DD, Pourmand N, Raney BJ, Roessler KA, Sanford JR, Sawyer RH, Schmidt CJ, Triplett EW, Tuberville TD, Venegas-Anaya M, Howard JT, Jarvis ED, Guillette LJ Jr, Glenn TC, Green RE, Ray DA.

Genome Biol. 2012 Jan 31;13(1):415. doi: 10.1186/gb-2012-13-1-415.

PMID:
22293439
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Testing hypotheses about the sister group of the passeriformes using an independent 30-locus data set.

Wang N, Braun EL, Kimball RT.

Mol Biol Evol. 2012 Feb;29(2):737-50. doi: 10.1093/molbev/msr230. Epub 2011 Sep 22.

PMID:
21940640
[PubMed - indexed for MEDLINE]
Free Article
14.

Evolutionary genomics implies a specific function of Ant4 in mammalian and anole lizard male germ cells.

Lim CH, Hamazaki T, Braun EL, Wade J, Terada N.

PLoS One. 2011;6(8):e23122. doi: 10.1371/journal.pone.0023122. Epub 2011 Aug 12.

PMID:
21858006
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A macroevolutionary perspective on multiple sexual traits in the phasianidae (galliformes).

Kimball RT, Mary CM, Braun EL.

Int J Evol Biol. 2011;2011:423938. doi: 10.4061/2011/423938. Epub 2011 May 2.

PMID:
21716735
[PubMed]
Free PMC Article
16.

Homoplastic microinversions and the avian tree of life.

Braun EL, Kimball RT, Han KL, Iuhasz-Velez NR, Bonilla AJ, Chojnowski JL, Smith JV, Bowie RC, Braun MJ, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Witt CC, Yuri T.

BMC Evol Biol. 2011 May 25;11:141. doi: 10.1186/1471-2148-11-141.

PMID:
21612607
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Evolutionary and comparative analysis of MYB and bHLH plant transcription factors.

Feller A, Machemer K, Braun EL, Grotewold E.

Plant J. 2011 Apr;66(1):94-116. doi: 10.1111/j.1365-313X.2010.04459.x. Review.

PMID:
21443626
[PubMed - indexed for MEDLINE]
18.

Are transposable element insertions homoplasy free?: an examination using the avian tree of life.

Han KL, Braun EL, Kimball RT, Reddy S, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, Witt CC, Yuri T.

Syst Biol. 2011 May;60(3):375-86. doi: 10.1093/sysbio/syq100. Epub 2011 Feb 8. No abstract available.

PMID:
21303823
[PubMed - indexed for MEDLINE]
19.

Comparative molecular evolution and phylogenetic utility of 3'-UTRs and introns in Galliformes.

Bonilla AJ, Braun EL, Kimball RT.

Mol Phylogenet Evol. 2010 Aug;56(2):536-42. doi: 10.1016/j.ympev.2010.04.006. Epub 2010 Apr 14.

PMID:
20398778
[PubMed - indexed for MEDLINE]
20.

From reptilian phylogenomics to reptilian genomes: analyses of c-Jun and DJ-1 proto-oncogenes.

Katsu Y, Braun EL, Guillette LJ Jr, Iguchi T.

Cytogenet Genome Res. 2009;127(2-4):79-93. doi: 10.1159/000297715. Epub 2010 Mar 17.

PMID:
20234127
[PubMed - indexed for MEDLINE]

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