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Results: 12

1.

Identification of divergent protein domains by combining HMM-HMM comparisons and co-occurrence detection.

Ghouila A, Florent I, Guerfali FZ, Terrapon N, Laouini D, Yahia SB, Gascuel O, Bréhélin L.

PLoS One. 2014 Jun 5;9(6):e95275. doi: 10.1371/journal.pone.0095275. eCollection 2014.

PMID:
24901648
[PubMed - in process]
Free PMC Article
2.

Computational discovery of regulatory elements in a continuous expression space.

Lajoie M, Gascuel O, Lefort V, Bréhélin L.

Genome Biol. 2012 Nov 27;13(11):R109. [Epub ahead of print]

PMID:
23186104
[PubMed - as supplied by publisher]
Free PMC Article
3.

Galvestine-1, a novel chemical probe for the study of the glycerolipid homeostasis system in plant cells.

Boudière L, Botté CY, Saidani N, Lajoie M, Marion J, Bréhélin L, Yamaryo-Botté Y, Satiat-Jeunemaître B, Breton C, Girard-Egrot A, Bastien O, Jouhet J, Falconet D, Block MA, Maréchal E.

Mol Biosyst. 2012 Aug;8(8):2023-35, 2014. doi: 10.1039/c2mb25067e. Epub 2012 May 16. Review.

PMID:
22592295
[PubMed - indexed for MEDLINE]
4.

Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum.

Terrapon N, Gascuel O, Maréchal E, Bréhélin L.

BMC Bioinformatics. 2012 May 1;13:67. doi: 10.1186/1471-2105-13-67.

PMID:
22548871
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Chemical inhibitors of monogalactosyldiacylglycerol synthases in Arabidopsis thaliana.

Botté CY, Deligny M, Roccia A, Bonneau AL, Saïdani N, Hardré H, Aci S, Yamaryo-Botté Y, Jouhet J, Dubots E, Loizeau K, Bastien O, Bréhélin L, Joyard J, Cintrat JC, Falconet D, Block MA, Rousseau B, Lopez R, Maréchal E.

Nat Chem Biol. 2011 Sep 25;7(11):834-42. doi: 10.1038/nchembio.658.

PMID:
21946275
[PubMed - indexed for MEDLINE]
6.

Bioinformatic strategies to provide functional clues to the unknown genes in Plasmodium falciparum genome.

Florent I, Maréchal E, Gascuel O, Bréhélin L.

Parasite. 2010 Dec;17(4):273-83. Review.

PMID:
21275233
[PubMed - indexed for MEDLINE]
7.

EuPathDomains: the divergent domain database for eukaryotic pathogens.

Ghouila A, Terrapon N, Gascuel O, Guerfali FZ, Laouini D, Maréchal E, Bréhélin L.

Infect Genet Evol. 2011 Jun;11(4):698-707. doi: 10.1016/j.meegid.2010.09.008. Epub 2010 Nov 4.

PMID:
20920608
[PubMed - indexed for MEDLINE]
8.

Assessing functional annotation transfers with inter-species conserved coexpression: application to Plasmodium falciparum.

Bréhélin L, Florent I, Gascuel O, Maréchal E.

BMC Genomics. 2010 Jan 15;11:35. doi: 10.1186/1471-2164-11-35.

PMID:
20078859
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity.

Philippe N, Boureux A, Bréhélin L, Tarhio J, Commes T, Rivals E.

Nucleic Acids Res. 2009 Aug;37(15):e104. doi: 10.1093/nar/gkp492. Epub 2009 Jun 16.

PMID:
19531739
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A Plasmodium falciparum FcB1-schizont-EST collection providing clues to schizont specific gene structure and polymorphism.

Florent I, Porcel BM, Guillaume E, Da Silva C, Artiguenave F, Maréchal E, Bréhélin L, Gascuel O, Charneau S, Wincker P, Grellier P.

BMC Genomics. 2009 May 19;10:235. doi: 10.1186/1471-2164-10-235.

PMID:
19454033
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data.

Bréhélin L, Dufayard JF, Gascuel O.

BMC Bioinformatics. 2008 Oct 16;9:440. doi: 10.1186/1471-2105-9-440.

PMID:
18925948
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Using repeated measurements to validate hierarchical gene clusters.

Bréhélin L, Gascuel O, Martin O.

Bioinformatics. 2008 Mar 1;24(5):682-8. doi: 10.1093/bioinformatics/btn017. Epub 2008 Jan 19.

PMID:
18204054
[PubMed - indexed for MEDLINE]
Free Article

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