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Items: 12


Identification of divergent protein domains by combining HMM-HMM comparisons and co-occurrence detection.

Ghouila A, Florent I, Guerfali FZ, Terrapon N, Laouini D, Yahia SB, Gascuel O, Bréhélin L.

PLoS One. 2014 Jun 5;9(6):e95275. doi: 10.1371/journal.pone.0095275. eCollection 2014.


Computational discovery of regulatory elements in a continuous expression space.

Lajoie M, Gascuel O, Lefort V, Bréhélin L.

Genome Biol. 2012 Nov 27;13(11):R109. doi: 10.1186/gb-2012-13-11-r109.


Galvestine-1, a novel chemical probe for the study of the glycerolipid homeostasis system in plant cells.

Boudière L, Botté CY, Saidani N, Lajoie M, Marion J, Bréhélin L, Yamaryo-Botté Y, Satiat-Jeunemaître B, Breton C, Girard-Egrot A, Bastien O, Jouhet J, Falconet D, Block MA, Maréchal E.

Mol Biosyst. 2012 Aug;8(8):2023-35, 2014. doi: 10.1039/c2mb25067e. Epub 2012 May 16. Review.


Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum.

Terrapon N, Gascuel O, Maréchal E, Bréhélin L.

BMC Bioinformatics. 2012 May 1;13:67. doi: 10.1186/1471-2105-13-67.


Chemical inhibitors of monogalactosyldiacylglycerol synthases in Arabidopsis thaliana.

Botté CY, Deligny M, Roccia A, Bonneau AL, Saïdani N, Hardré H, Aci S, Yamaryo-Botté Y, Jouhet J, Dubots E, Loizeau K, Bastien O, Bréhélin L, Joyard J, Cintrat JC, Falconet D, Block MA, Rousseau B, Lopez R, Maréchal E.

Nat Chem Biol. 2011 Sep 25;7(11):834-42. doi: 10.1038/nchembio.658.


Bioinformatic strategies to provide functional clues to the unknown genes in Plasmodium falciparum genome.

Florent I, Maréchal E, Gascuel O, Bréhélin L.

Parasite. 2010 Dec;17(4):273-83. Review.


EuPathDomains: the divergent domain database for eukaryotic pathogens.

Ghouila A, Terrapon N, Gascuel O, Guerfali FZ, Laouini D, Maréchal E, Bréhélin L.

Infect Genet Evol. 2011 Jun;11(4):698-707. doi: 10.1016/j.meegid.2010.09.008. Epub 2010 Nov 4.


Assessing functional annotation transfers with inter-species conserved coexpression: application to Plasmodium falciparum.

Bréhélin L, Florent I, Gascuel O, Maréchal E.

BMC Genomics. 2010 Jan 15;11:35. doi: 10.1186/1471-2164-11-35.


Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity.

Philippe N, Boureux A, Bréhélin L, Tarhio J, Commes T, Rivals E.

Nucleic Acids Res. 2009 Aug;37(15):e104. doi: 10.1093/nar/gkp492. Epub 2009 Jun 16.


A Plasmodium falciparum FcB1-schizont-EST collection providing clues to schizont specific gene structure and polymorphism.

Florent I, Porcel BM, Guillaume E, Da Silva C, Artiguenave F, Maréchal E, Bréhélin L, Gascuel O, Charneau S, Wincker P, Grellier P.

BMC Genomics. 2009 May 19;10:235. doi: 10.1186/1471-2164-10-235.


PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data.

Bréhélin L, Dufayard JF, Gascuel O.

BMC Bioinformatics. 2008 Oct 16;9:440. doi: 10.1186/1471-2105-9-440.


Using repeated measurements to validate hierarchical gene clusters.

Bréhélin L, Gascuel O, Martin O.

Bioinformatics. 2008 Mar 1;24(5):682-8. doi: 10.1093/bioinformatics/btn017. Epub 2008 Jan 19.

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