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Items: 1 to 20 of 39

1.

View from the heart: cardiac fibroblasts in development, scarring and regeneration.

Furtado MB, Nim HT, Boyd SE, Rosenthal NA.

Development. 2016 Feb 1;143(3):387-97. doi: 10.1242/dev.120576. Review.

PMID:
26839342
2.

CARFMAP: A Curated Pathway Map of Cardiac Fibroblasts.

Nim HT, Furtado MB, Costa MW, Kitano H, Rosenthal NA, Boyd SE.

PLoS One. 2015 Dec 16;10(12):e0143274. doi: 10.1371/journal.pone.0143274. eCollection 2015.

3.

Microarray profiling to analyse adult cardiac fibroblast identity.

Furtado MB, Nim HT, Gould JA, Costa MW, Rosenthal NA, Boyd SE.

Genom Data. 2014 Oct 12;2:345-50. doi: 10.1016/j.gdata.2014.10.006. eCollection 2014 Dec.

4.

Direct Mitsunobu monoesterification of N-protected tobramycin competes with intramolecular pyrrolidine formation in ester prodrug synthesis.

Quader S, Boyd SE, Jenkins ID, Houston TA.

Carbohydr Res. 2015 Sep 2;413:16-21. doi: 10.1016/j.carres.2015.04.013. Epub 2015 May 21.

PMID:
26062898
5.

VISIONET: intuitive visualisation of overlapping transcription factor networks, with applications in cardiogenic gene discovery.

Nim HT, Furtado MB, Costa MW, Rosenthal NA, Kitano H, Boyd SE.

BMC Bioinformatics. 2015 May 1;16:141. doi: 10.1186/s12859-015-0578-0.

6.

Systems approaches in integrative cardiac biology: illustrations from cardiac heterocellular signalling studies.

Nim HT, Boyd SE, Rosenthal NA.

Prog Biophys Mol Biol. 2015 Jan;117(1):69-77. doi: 10.1016/j.pbiomolbio.2014.11.006. Epub 2014 Dec 9.

PMID:
25499442
7.

Analysis of the minimal specificity of caspase-2 and identification of Ac-VDTTD-AFC as a caspase-2-selective peptide substrate.

Kitevska T, Roberts SJ, Pantaki-Eimany D, Boyd SE, Scott FL, Hawkins CJ.

Biosci Rep. 2014 Feb 17. [Epub ahead of print]

8.

Molecular composition of recycled organic wastes, as determined by solid-state 13C NMR and elemental analyses.

Eldridge SM, Chen CR, Xu ZH, Nelson PN, Boyd SE, Meszaros I, Chan KY.

Waste Manag. 2013 Nov;33(11):2157-69. doi: 10.1016/j.wasman.2013.06.013. Epub 2013 Jul 27.

PMID:
23896223
9.

A Bayesian method for comparing and combining binary classifiers in the absence of a gold standard.

Keith JM, Davey CM, Boyd SE.

BMC Bioinformatics. 2012 Jul 27;13:179. doi: 10.1186/1471-2105-13-179.

10.

Dicyclo-hexyl-ammonium (S)-2-azido-3-phenyl-propano-ate.

Petrik SJ, Brown CL, Boyd SE, Healy PC.

Acta Crystallogr Sect E Struct Rep Online. 2012 Jul 1;68(Pt 7):o2050. doi: 10.1107/S1600536812025536. Epub 2012 Jun 13.

11.

Software support for SBGN maps: SBGN-ML and LibSBGN.

van Iersel MP, Villéger AC, Czauderna T, Boyd SE, Bergmann FT, Luna A, Demir E, Sorokin A, Dogrusoz U, Matsuoka Y, Funahashi A, Aladjem MI, Mi H, Moodie SL, Kitano H, Le Novère N, Schreiber F.

Bioinformatics. 2012 Aug 1;28(15):2016-21. Epub 2012 May 10.

12.

Computational characterization of 3' splice variants in the GFAP isoform family.

Boyd SE, Nair B, Ng SW, Keith JM, Orian JM.

PLoS One. 2012;7(3):e33565. doi: 10.1371/journal.pone.0033565. Epub 2012 Mar 30.

13.

Discovery of amino acid motifs for thrombin cleavage and validation using a model substrate.

Ng NM, Pierce JD, Webb GI, Ratnikov BI, Wijeyewickrema LC, Duncan RC, Robertson AL, Bottomley SP, Boyd SE, Pike RN.

Biochemistry. 2011 Dec 6;50(48):10499-507. doi: 10.1021/bi201333g. Epub 2011 Nov 11.

PMID:
22050556
14.

Bioinformatic approaches for predicting substrates of proteases.

Song J, Tan H, Boyd SE, Shen H, Mahmood K, Webb GI, Akutsu T, Whisstock JC, Pike RN.

J Bioinform Comput Biol. 2011 Feb;9(1):149-78. Review.

PMID:
21328711
15.

Substance abuse treatment counselors and tobacco use: a comparison of comprehensive and indoor-only workplace smoking bans.

Knudsen HK, Boyd SE, Studts JL.

Nicotine Tob Res. 2010 Nov;12(11):1151-5. doi: 10.1093/ntr/ntq145. Epub 2010 Sep 2.

17.

A novel Entamoeba histolytica cysteine proteinase, EhCP4, is key for invasive amebiasis and a therapeutic target.

He C, Nora GP, Schneider EL, Kerr ID, Hansell E, Hirata K, Gonzalez D, Sajid M, Boyd SE, Hruz P, Cobo ER, Le C, Liu WT, Eckmann L, Dorrestein PC, Houpt ER, Brinen LS, Craik CS, Roush WR, McKerrow J, Reed SL.

J Biol Chem. 2010 Jun 11;285(24):18516-27. doi: 10.1074/jbc.M109.086181. Epub 2010 Apr 8.

18.

Cascleave: towards more accurate prediction of caspase substrate cleavage sites.

Song J, Tan H, Shen H, Mahmood K, Boyd SE, Webb GI, Akutsu T, Whisstock JC.

Bioinformatics. 2010 Mar 15;26(6):752-60. doi: 10.1093/bioinformatics/btq043. Epub 2010 Feb 3.

19.

Characterization of a serine protease homologous to house dust mite group 3 allergens from the scabies mite Sarcoptes scabiei.

Beckham SA, Boyd SE, Reynolds S, Willis C, Johnstone M, Mika A, Simerská P, Wijeyewickrema LC, Smith AI, Kemp DJ, Pike RN, Fischer K.

J Biol Chem. 2009 Dec 4;284(49):34413-22. doi: 10.1074/jbc.M109.061911. Epub 2009 Oct 7.

20.

The Systems Biology Graphical Notation.

Le Novère N, Hucka M, Mi H, Moodie S, Schreiber F, Sorokin A, Demir E, Wegner K, Aladjem MI, Wimalaratne SM, Bergman FT, Gauges R, Ghazal P, Kawaji H, Li L, Matsuoka Y, Villéger A, Boyd SE, Calzone L, Courtot M, Dogrusoz U, Freeman TC, Funahashi A, Ghosh S, Jouraku A, Kim S, Kolpakov F, Luna A, Sahle S, Schmidt E, Watterson S, Wu G, Goryanin I, Kell DB, Sander C, Sauro H, Snoep JL, Kohn K, Kitano H.

Nat Biotechnol. 2009 Aug;27(8):735-41. doi: 10.1038/nbt.1558. Epub 2009 Aug 7. Erratum in: Nat Biotechnol. 2009 Sep;27(9):864.

PMID:
19668183
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