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Sequence-targeted nucleosome sliding in vivo by a hybrid Chd1 chromatin remodeler.

McKnight JN, Tsukiyama T, Bowman GD.

Genome Res. 2016 Mar 18. pii: gr.199919.115. [Epub ahead of print]


A Naturally Occurring Repeat Protein with High Internal Sequence Identity Defines a New Class of TPR-like Proteins.

Marold JD, Kavran JM, Bowman GD, Barrick D.

Structure. 2015 Nov 3;23(11):2055-65. doi: 10.1016/j.str.2015.07.022. Epub 2015 Oct 1.


Formation of a Trimeric Xpo1-Ran[GTP]-Ded1 Exportin Complex Modulates ATPase and Helicase Activities of Ded1.

Hauk G, Bowman GD.

PLoS One. 2015 Jun 29;10(6):e0131690. doi: 10.1371/journal.pone.0131690. eCollection 2015.


Dynamic regulation of transcription factors by nucleosome remodeling.

Li M, Hada A, Sen P, Olufemi L, Hall MA, Smith BY, Forth S, McKnight JN, Patel A, Bowman GD, Bartholomew B, Wang MD.

Elife. 2015 Jun 5;4. doi: 10.7554/eLife.06249.


Post-translational modifications of histones that influence nucleosome dynamics.

Bowman GD, Poirier MG.

Chem Rev. 2015 Mar 25;115(6):2274-95. doi: 10.1021/cr500350x. Epub 2014 Nov 26. Review. No abstract available.


Nucleosome sliding by Chd1 does not require rigid coupling between DNA-binding and ATPase domains.

Nodelman IM, Bowman GD.

EMBO Rep. 2013 Dec;14(12):1098-103. doi: 10.1038/embor.2013.158. Epub 2013 Oct 15.


ATP-dependent chromatin assembly is functionally distinct from chromatin remodeling.

Torigoe SE, Patel A, Khuong MT, Bowman GD, Kadonaga JT.

Elife. 2013 Aug 20;2:e00863. doi: 10.7554/eLife.00863.


Decoupling nucleosome recognition from DNA binding dramatically alters the properties of the Chd1 chromatin remodeler.

Patel A, Chakravarthy S, Morrone S, Nodelman IM, McKnight JN, Bowman GD.

Nucleic Acids Res. 2013 Feb 1;41(3):1637-48. doi: 10.1093/nar/gks1440. Epub 2012 Dec 28.


Enzymatic excision of uracil residues in nucleosomes depends on the local DNA structure and dynamics.

Ye Y, Stahley MR, Xu J, Friedman JI, Sun Y, McKnight JN, Gray JJ, Bowman GD, Stivers JT.

Biochemistry. 2012 Jul 31;51(30):6028-38. Epub 2012 Jul 23.


The basic linker of macroH2A stabilizes DNA at the entry/exit site of the nucleosome.

Chakravarthy S, Patel A, Bowman GD.

Nucleic Acids Res. 2012 Sep 1;40(17):8285-95. Epub 2012 Jun 29.


Identification of residues in chromodomain helicase DNA-binding protein 1 (Chd1) required for coupling ATP hydrolysis to nucleosome sliding.

Patel A, McKnight JN, Genzor P, Bowman GD.

J Biol Chem. 2011 Dec 23;286(51):43984-93. doi: 10.1074/jbc.M111.282970. Epub 2011 Oct 28.


Crystal structure of the chromodomain helicase DNA-binding protein 1 (Chd1) DNA-binding domain in complex with DNA.

Sharma A, Jenkins KR, Héroux A, Bowman GD.

J Biol Chem. 2011 Dec 9;286(49):42099-104. doi: 10.1074/jbc.C111.294462. Epub 2011 Oct 27.


Structural insights into regulation and action of SWI2/SNF2 ATPases.

Hauk G, Bowman GD.

Curr Opin Struct Biol. 2011 Dec;21(6):719-27. doi: 10.1016/ Epub 2011 Oct 11. Review.


Extranucleosomal DNA binding directs nucleosome sliding by Chd1.

McKnight JN, Jenkins KR, Nodelman IM, Escobar T, Bowman GD.

Mol Cell Biol. 2011 Dec;31(23):4746-59. doi: 10.1128/MCB.05735-11. Epub 2011 Oct 3.


Rapid DNA-protein cross-linking and strand scission by an abasic site in a nucleosome core particle.

Sczepanski JT, Wong RS, McKnight JN, Bowman GD, Greenberg MM.

Proc Natl Acad Sci U S A. 2010 Dec 28;107(52):22475-80. doi: 10.1073/pnas.1012860108. Epub 2010 Dec 13.


The chromodomains of the Chd1 chromatin remodeler regulate DNA access to the ATPase motor.

Hauk G, McKnight JN, Nodelman IM, Bowman GD.

Mol Cell. 2010 Sep 10;39(5):711-23. doi: 10.1016/j.molcel.2010.08.012.


Analysis of the role of PCNA-DNA contacts during clamp loading.

McNally R, Bowman GD, Goedken ER, O'Donnell M, Kuriyan J.

BMC Struct Biol. 2010 Jan 30;10:3. doi: 10.1186/1472-6807-10-3.


Mechanisms of ATP-dependent nucleosome sliding.

Bowman GD.

Curr Opin Struct Biol. 2010 Feb;20(1):73-81. doi: 10.1016/ Epub 2010 Jan 8. Review.


Magnetic tweezers measurement of single molecule torque.

Celedon A, Nodelman IM, Wildt B, Dewan R, Searson P, Wirtz D, Bowman GD, Sun SX.

Nano Lett. 2009 Apr;9(4):1720-5. doi: 10.1021/nl900631w.


The replication factor C clamp loader requires arginine finger sensors to drive DNA binding and proliferating cell nuclear antigen loading.

Johnson A, Yao NY, Bowman GD, Kuriyan J, O'Donnell M.

J Biol Chem. 2006 Nov 17;281(46):35531-43. Epub 2006 Sep 15.

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