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Results: 1 to 20 of 64

1.

KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes.

Steiner A, Stucki D, Coscolla M, Borrell S, Gagneux S.

BMC Genomics. 2014 Oct 9;15(1):881. doi: 10.1186/1471-2164-15-881.

PMID:
25297886
[PubMed - in process]
Free PMC Article
2.

Evolution of drug resistance in tuberculosis: recent progress and implications for diagnosis and therapy.

Trauner A, Borrell S, Reither K, Gagneux S.

Drugs. 2014 Jul;74(10):1063-72. doi: 10.1007/s40265-014-0248-y.

PMID:
24962424
[PubMed - in process]
Free PMC Article
3.

Evaluation of customised lineage-specific sets of MIRU-VNTR loci for genotyping Mycobacterium tuberculosis complex isolates in Ghana.

Asante-Poku A, Nyaho MS, Borrell S, Comas I, Gagneux S, Yeboah-Manu D.

PLoS One. 2014 Mar 25;9(3):e92675. doi: 10.1371/journal.pone.0092675. eCollection 2014.

PMID:
24667333
[PubMed - in process]
Free PMC Article
4.

Epistasis between antibiotic resistance mutations drives the evolution of extensively drug-resistant tuberculosis.

Borrell S, Teo Y, Giardina F, Streicher EM, Klopper M, Feldmann J, Müller B, Victor TC, Gagneux S.

Evol Med Public Health. 2013 Jan;2013(1):65-74. doi: 10.1093/emph/eot003. Epub 2013 Mar 8.

PMID:
24481187
[PubMed]
Free PMC Article
5.

Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans.

Comas I, Coscolla M, Luo T, Borrell S, Holt KE, Kato-Maeda M, Parkhill J, Malla B, Berg S, Thwaites G, Yeboah-Manu D, Bothamley G, Mei J, Wei L, Bentley S, Harris SR, Niemann S, Diel R, Aseffa A, Gao Q, Young D, Gagneux S.

Nat Genet. 2013 Oct;45(10):1176-82. doi: 10.1038/ng.2744. Epub 2013 Sep 1.

PMID:
23995134
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

HIV infection disrupts the sympatric host-pathogen relationship in human tuberculosis.

Fenner L, Egger M, Bodmer T, Furrer H, Ballif M, Battegay M, Helbling P, Fehr J, Gsponer T, Rieder HL, Zwahlen M, Hoffmann M, Bernasconi E, Cavassini M, Calmy A, Dolina M, Frei R, Janssens JP, Borrell S, Stucki D, Schrenzel J, Böttger EC, Gagneux S; Swiss HIV Cohort and Molecular Epidemiology of Tuberculosis Study Groups.

PLoS Genet. 2013;9(3):e1003318. doi: 10.1371/journal.pgen.1003318. Epub 2013 Mar 7.

PMID:
23505379
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

First insights into the phylogenetic diversity of Mycobacterium tuberculosis in Nepal.

Malla B, Stucki D, Borrell S, Feldmann J, Maharjan B, Shrestha B, Fenner L, Gagneux S.

PLoS One. 2012;7(12):e52297. doi: 10.1371/journal.pone.0052297. Epub 2012 Dec 26.

PMID:
23300635
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The heterogeneous evolution of multidrug-resistant Mycobacterium tuberculosis.

Müller B, Borrell S, Rose G, Gagneux S.

Trends Genet. 2013 Mar;29(3):160-9. doi: 10.1016/j.tig.2012.11.005. Epub 2012 Dec 13. Review.

PMID:
23245857
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Putative compensatory mutations in the rpoC gene of rifampin-resistant Mycobacterium tuberculosis are associated with ongoing transmission.

de Vos M, Müller B, Borrell S, Black PA, van Helden PD, Warren RM, Gagneux S, Victor TC.

Antimicrob Agents Chemother. 2013 Feb;57(2):827-32. doi: 10.1128/AAC.01541-12. Epub 2012 Dec 3.

PMID:
23208709
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Prevalence and risk factors for VRE colonisation in a tertiary hospital in Melbourne, Australia: a cross sectional study.

Karki S, Houston L, Land G, Bass P, Kehoe R, Borrell S, Watson K, Spelman D, Kennon J, Harrington G, Cheng AC.

Antimicrob Resist Infect Control. 2012 Oct 8;1(1):31. doi: 10.1186/2047-2994-1-31.

PMID:
23039285
[PubMed]
Free PMC Article
11.

A case of cutaneous tuberculosis in a Buruli ulcer-endemic area.

Bratschi MW, Njih Tabah E, Bolz M, Stucki D, Borrell S, Gagneux S, Noumen-Djeunga B, Junghanss T, Um Boock A, Pluschke G.

PLoS Negl Trop Dis. 2012;6(8):e1751. doi: 10.1371/journal.pntd.0001751. Epub 2012 Aug 28. No abstract available.

PMID:
22953005
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Drug resistance-conferring mutations in Mycobacterium tuberculosis from Madang, Papua New Guinea.

Ballif M, Harino P, Ley S, Coscolla M, Niemann S, Carter R, Coulter C, Borrell S, Siba P, Phuanukoonnon S, Gagneux S, Beck HP.

BMC Microbiol. 2012 Sep 4;12:191. doi: 10.1186/1471-2180-12-191.

PMID:
22943573
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Two new rapid SNP-typing methods for classifying Mycobacterium tuberculosis complex into the main phylogenetic lineages.

Stucki D, Malla B, Hostettler S, Huna T, Feldmann J, Yeboah-Manu D, Borrell S, Fenner L, Comas I, Coscollà M, Gagneux S.

PLoS One. 2012;7(7):e41253. doi: 10.1371/journal.pone.0041253. Epub 2012 Jul 20.

PMID:
22911768
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Genetic diversity of Mycobacterium tuberculosis in Madang, Papua New Guinea.

Ballif M, Harino P, Ley S, Carter R, Coulter C, Niemann S, Borrell S, Fenner L, Siba P, Phuanukoonnon S, Gagneux S, Beck HP.

Int J Tuberc Lung Dis. 2012 Aug;16(8):1100-7. doi: 10.5588/ijtld.11.0779. Epub 2012 Jun 14.

PMID:
22710686
[PubMed - indexed for MEDLINE]
15.

Effect of mutation and genetic background on drug resistance in Mycobacterium tuberculosis.

Fenner L, Egger M, Bodmer T, Altpeter E, Zwahlen M, Jaton K, Pfyffer GE, Borrell S, Dubuis O, Bruderer T, Siegrist HH, Furrer H, Calmy A, Fehr J, Stalder JM, Ninet B, Böttger EC, Gagneux S; Swiss HIV Cohort Study and the Swiss Molecular Epidemiology of Tuberculosis Study Group.

Antimicrob Agents Chemother. 2012 Jun;56(6):3047-53. doi: 10.1128/AAC.06460-11. Epub 2012 Apr 2.

PMID:
22470121
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes.

Comas I, Borrell S, Roetzer A, Rose G, Malla B, Kato-Maeda M, Galagan J, Niemann S, Gagneux S.

Nat Genet. 2011 Dec 18;44(1):106-10. doi: 10.1038/ng.1038.

PMID:
22179134
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

"Pseudo-Beijing": evidence for convergent evolution in the direct repeat region of Mycobacterium tuberculosis.

Fenner L, Malla B, Ninet B, Dubuis O, Stucki D, Borrell S, Huna T, Bodmer T, Egger M, Gagneux S.

PLoS One. 2011;6(9):e24737. doi: 10.1371/journal.pone.0024737. Epub 2011 Sep 13.

PMID:
21935448
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Impaired fitness of Mycobacterium tuberculosis resistant isolates in a cell culture model of murine macrophages.

Rey-Jurado E, Tudó G, Borrell S, Alcaide F, Coll P, Español M, Martín-Casabona N, Mick V, Montemayor M, Moure R, Salvadó M, Vicente E, González-Martín J.

J Antimicrob Chemother. 2011 Oct;66(10):2277-80. doi: 10.1093/jac/dkr288. Epub 2011 Jul 25.

PMID:
21791442
[PubMed - indexed for MEDLINE]
Free Article
19.

Strain diversity, epistasis and the evolution of drug resistance in Mycobacterium tuberculosis.

Borrell S, Gagneux S.

Clin Microbiol Infect. 2011 Jun;17(6):815-20. doi: 10.1111/j.1469-0691.2011.03556.x. Review.

PMID:
21682802
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

IS6110-based global phylogeny of Mycobacterium tuberculosis.

Thorne N, Borrell S, Evans J, Magee J, García de Viedma D, Bishop C, Gonzalez-Martin J, Gharbia S, Arnold C.

Infect Genet Evol. 2011 Jan;11(1):132-8. doi: 10.1016/j.meegid.2010.09.011. Epub 2010 Dec 4.

PMID:
20920607
[PubMed - indexed for MEDLINE]

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