Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 443

1.

Novel drug candidates for the treatment of metastatic colorectal cancer through global inverse gene expression profiling.

van Noort VV, Schölch S, Iskar M, Zeller G, Ostertag K, Schweitzer C, Werner K, Weitz J, Koch M, Bork P.

Cancer Res. 2014 Jul 18. pii: canres.3540.2013. [Epub ahead of print]

PMID:
25038229
[PubMed - as supplied by publisher]
2.

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.

Nielsen HB, Almeida M, Juncker AS, Rasmussen S, Li J, Sunagawa S, Plichta DR, Gautier L, Pedersen AG, Le Chatelier E, Pelletier E, Bonde I, Nielsen T, Manichanh C, Arumugam M, Batto JM, Quintanilha Dos Santos MB, Blom N, Borruel N, Burgdorf KS, Boumezbeur F, Casellas F, Doré J, Dworzynski P, Guarner F, Hansen T, Hildebrand F, Kaas RS, Kennedy S, Kristiansen K, Kultima JR, Léonard P, Levenez F, Lund O, Moumen B, Le Paslier D, Pons N, Pedersen O, Prifti E, Qin J, Raes J, Sørensen S, Tap J, Tims S, Ussery DW, Yamada T; MetaHIT Consortium, Renault P, Sicheritz-Ponten T, Bork P, Wang J, Brunak S, Ehrlich SD.

Nat Biotechnol. 2014 Jul 6. doi: 10.1038/nbt.2939. [Epub ahead of print]

PMID:
24997787
[PubMed - as supplied by publisher]
3.

An integrated catalog of reference genes in the human gut microbiome.

Li J, Jia H, Cai X, Zhong H, Feng Q, Sunagawa S, Arumugam M, Kultima JR, Prifti E, Nielsen T, Juncker AS, Manichanh C, Chen B, Zhang W, Levenez F, Wang J, Xu X, Xiao L, Liang S, Zhang D, Zhang Z, Chen W, Zhao H, Al-Aama JY, Edris S, Yang H, Wang J, Hansen T, Nielsen HB, Brunak S, Kristiansen K, Guarner F, Pedersen O, Doré J, Ehrlich SD; MetaHIT Consortium, Bork P, Wang J.

Nat Biotechnol. 2014 Jul 6. doi: 10.1038/nbt.2942. [Epub ahead of print]

PMID:
24997786
[PubMed - as supplied by publisher]
4.

Classification and quantification of bacteriophage taxa in human gut metagenomes.

Waller AS, Yamada T, Kristensen DM, Kultima JR, Sunagawa S, Koonin EV, Bork P.

ISME J. 2014 Jul;8(7):1551-2. doi: 10.1038/ismej.2014.66. No abstract available.

PMID:
24957582
[PubMed - in process]
5.

A fair comparison.

Costea PI, Zeller G, Sunagawa S, Bork P.

Nat Methods. 2014 Apr;11(4):359. doi: 10.1038/nmeth.2897. No abstract available.

PMID:
24681719
[PubMed - indexed for MEDLINE]
6.

Classification and quantification of bacteriophage taxa in human gut metagenomes.

Waller AS, Yamada T, Kristensen DM, Kultima JR, Sunagawa S, Koonin EV, Bork P.

ISME J. 2014 Jul;8(7):1391-402. doi: 10.1038/ismej.2014.30. Epub 2014 Mar 13.

PMID:
24621522
[PubMed - in process]
7.

Metagenomic insights into the human gut resistome and the forces that shape it.

Forslund K, Sunagawa S, Coelho LP, Bork P.

Bioessays. 2014 Mar;36(3):316-29. doi: 10.1002/bies.201300143. Epub 2014 Jan 29.

PMID:
24474281
[PubMed - in process]
8.

Structural analysis of protein-ligand interactions: the binding of endogenous compounds and of synthetic drugs.

Gallina AM, Bork P, Bordo D.

J Mol Recognit. 2014 Feb;27(2):65-72. doi: 10.1002/jmr.2332.

PMID:
24436123
[PubMed - in process]
9.

Evolution and functional cross-talk of protein post-translational modifications.

Beltrao P, Bork P, Krogan NJ, van Noort V.

Mol Syst Biol. 2013 Dec 22;9:714. doi: 10.1002/msb.201304521. Print 2013. Review.

PMID:
24366814
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

eggNOG v4.0: nested orthology inference across 3686 organisms.

Powell S, Forslund K, Szklarczyk D, Trachana K, Roth A, Huerta-Cepas J, Gabaldón T, Rattei T, Creevey C, Kuhn M, Jensen LJ, von Mering C, Bork P.

Nucleic Acids Res. 2014 Jan;42(Database issue):D231-9. doi: 10.1093/nar/gkt1253. Epub 2013 Dec 1.

PMID:
24297252
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

STITCH 4: integration of protein-chemical interactions with user data.

Kuhn M, Szklarczyk D, Pletscher-Frankild S, Blicher TH, von Mering C, Jensen LJ, Bork P.

Nucleic Acids Res. 2014 Jan;42(Database issue):D401-7. doi: 10.1093/nar/gkt1207. Epub 2013 Nov 28.

PMID:
24293645
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A quantitative liposome microarray to systematically characterize protein-lipid interactions.

Saliba AE, Vonkova I, Ceschia S, Findlay GM, Maeda K, Tischer C, Deghou S, van Noort V, Bork P, Pawson T, Ellenberg J, Gavin AC.

Nat Methods. 2014 Jan;11(1):47-50. doi: 10.1038/nmeth.2734. Epub 2013 Nov 24.

PMID:
24270602
[PubMed - indexed for MEDLINE]
13.

Metagenomic species profiling using universal phylogenetic marker genes.

Sunagawa S, Mende DR, Zeller G, Izquierdo-Carrasco F, Berger SA, Kultima JR, Coelho LP, Arumugam M, Tap J, Nielsen HB, Rasmussen S, Brunak S, Pedersen O, Guarner F, de Vos WM, Wang J, Li J, Doré J, Ehrlich SD, Stamatakis A, Bork P.

Nat Methods. 2013 Dec;10(12):1196-9. doi: 10.1038/nmeth.2693. Epub 2013 Oct 20.

PMID:
24141494
[PubMed - indexed for MEDLINE]
14.

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities.

Logares R, Sunagawa S, Salazar G, Cornejo-Castillo FM, Ferrera I, Sarmento H, Hingamp P, Ogata H, de Vargas C, Lima-Mendez G, Raes J, Poulain J, Jaillon O, Wincker P, Kandels-Lewis S, Karsenti E, Bork P, Acinas SG.

Environ Microbiol. 2013 Aug 18. doi: 10.1111/1462-2920.12250. [Epub ahead of print]

PMID:
24102695
[PubMed - as supplied by publisher]
15.

Richness of human gut microbiome correlates with metabolic markers.

Le Chatelier E, Nielsen T, Qin J, Prifti E, Hildebrand F, Falony G, Almeida M, Arumugam M, Batto JM, Kennedy S, Leonard P, Li J, Burgdorf K, Grarup N, Jørgensen T, Brandslund I, Nielsen HB, Juncker AS, Bertalan M, Levenez F, Pons N, Rasmussen S, Sunagawa S, Tap J, Tims S, Zoetendal EG, Brunak S, Clément K, Doré J, Kleerebezem M, Kristiansen K, Renault P, Sicheritz-Ponten T, de Vos WM, Zucker JD, Raes J, Hansen T; MetaHIT consortium, Bork P, Wang J, Ehrlich SD, Pedersen O.

Nature. 2013 Aug 29;500(7464):541-6. doi: 10.1038/nature12506.

PMID:
23985870
[PubMed - indexed for MEDLINE]
16.

Experimental characterization of the human non-sequence-specific nucleic acid interactome.

Dürnberger G, Bürckstümmer T, Huber K, Giambruno R, Doerks T, Karayel E, Burkard TR, Kaupe I, Müller AC, Schönegger A, Ecker GF, Lohninger H, Bork P, Bennett KL, Superti-Furga G, Colinge J.

Genome Biol. 2013 Jul 31;14(7):R81. doi: 10.1186/gb-2013-14-7-r81.

PMID:
23902751
[PubMed - in process]
Free PMC Article
17.

Accurate and universal delineation of prokaryotic species.

Mende DR, Sunagawa S, Zeller G, Bork P.

Nat Methods. 2013 Sep;10(9):881-4. doi: 10.1038/nmeth.2575. Epub 2013 Jul 28.

PMID:
23892899
[PubMed - indexed for MEDLINE]
18.

Human monogenic disease genes have frequently functionally redundant paralogs.

Chen WH, Zhao XM, van Noort V, Bork P.

PLoS Comput Biol. 2013;9(5):e1003073. doi: 10.1371/journal.pcbi.1003073. Epub 2013 May 16.

PMID:
23696728
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Systematic identification of proteins that elicit drug side effects.

Kuhn M, Al Banchaabouchi M, Campillos M, Jensen LJ, Gross C, Gavin AC, Bork P.

Mol Syst Biol. 2013;9:663. doi: 10.1038/msb.2013.10.

PMID:
23632385
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Characterization of drug-induced transcriptional modules: towards drug repositioning and functional understanding.

Iskar M, Zeller G, Blattmann P, Campillos M, Kuhn M, Kaminska KH, Runz H, Gavin AC, Pepperkok R, van Noort V, Bork P.

Mol Syst Biol. 2013;9:662. doi: 10.1038/msb.2013.20.

PMID:
23632384
[PubMed - indexed for MEDLINE]
Free PMC Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk