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Results: 1 to 20 of 57

1.

Population genomic variation reveals roles of history, adaptation and ploidy in switchgrass.

Grabowski PP, Morris GP, Casler MD, Borevitz JO.

Mol Ecol. 2014 Jun 24. doi: 10.1111/mec.12845. [Epub ahead of print]

PMID:
24962137
[PubMed - as supplied by publisher]
2.

TraitCapture: genomic and environment modelling of plant phenomic data.

Brown TB, Cheng R, Sirault XR, Rungrat T, Murray KD, Trtilek M, Furbank RT, Badger M, Pogson BJ, Borevitz JO.

Curr Opin Plant Biol. 2014 Apr;18:73-9. doi: 10.1016/j.pbi.2014.02.002. Epub 2014 Mar 16.

PMID:
24646691
[PubMed - in process]
Free Article
3.

New Arabidopsis advanced intercross recombinant inbred lines reveal female control of nonrandom mating.

Fitz Gerald JN, Carlson AL, Smith E, Maloof JN, Weigel D, Chory J, Borevitz JO, Swanson RJ.

Plant Physiol. 2014 May;165(1):175-85. doi: 10.1104/pp.113.233213. Epub 2014 Mar 12.

PMID:
24623850
[PubMed - in process]
Free PMC Article
4.

Genetic variation for life history sensitivity to seasonal warming in Arabidopsis thaliana.

Li Y, Cheng R, Spokas KA, Palmer AA, Borevitz JO.

Genetics. 2014 Feb;196(2):569-77. doi: 10.1534/genetics.113.157628. Epub 2013 Nov 26.

PMID:
24281156
[PubMed - in process]
Free PMC Article
5.

C(m)CGG methylation-independent parent-of-origin effects on genome-wide transcript levels in isogenic reciprocal F1 triploid plants.

Donoghue MT, Fort A, Clifton R, Zhang X, McKeown PC, Voigt-Zielinksi ML, Borevitz JO, Spillane C.

DNA Res. 2014;21(2):141-51. doi: 10.1093/dnares/dst046. Epub 2013 Nov 7.

PMID:
24212467
[PubMed - in process]
Free PMC Article
6.

Natural Genetic Variation for Growth and Development Revealed by High-Throughput Phenotyping in Arabidopsis thaliana.

Zhang X, Hause RJ Jr, Borevitz JO.

G3 (Bethesda). 2012 Jan;2(1):29-34. doi: 10.1534/g3.111.001487. Epub 2012 Jan 1.

PMID:
22384379
[PubMed]
Free PMC Article
7.

Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel.

Horton MW, Hancock AM, Huang YS, Toomajian C, Atwell S, Auton A, Muliyati NW, Platt A, Sperone FG, Vilhjálmsson BJ, Nordborg M, Borevitz JO, Bergelson J.

Nat Genet. 2012 Jan 8;44(2):212-6. doi: 10.1038/ng.1042.

PMID:
22231484
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Widespread interspecific divergence in cis-regulation of transposable elements in the Arabidopsis genus.

He F, Zhang X, Hu JY, Turck F, Dong X, Goebel U, Borevitz JO, de Meaux J.

Mol Biol Evol. 2012 Mar;29(3):1081-91. doi: 10.1093/molbev/msr281. Epub 2011 Nov 15.

PMID:
22086904
[PubMed - indexed for MEDLINE]
Free Article
9.

Genomic diversity in switchgrass (Panicum virgatum): from the continental scale to a dune landscape.

Morris GP, Grabowski PP, Borevitz JO.

Mol Ecol. 2011 Dec;20(23):4938-52. doi: 10.1111/j.1365-294X.2011.05335.x. Epub 2011 Nov 8.

PMID:
22060816
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genome-wide association studies in plants: the missing heritability is in the field.

Brachi B, Morris GP, Borevitz JO.

Genome Biol. 2011 Oct 28;12(10):232. doi: 10.1186/gb-2011-12-10-232. Review.

PMID:
22035733
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Analysis and visualization of Arabidopsis thaliana GWAS using web 2.0 technologies.

Huang YS, Horton M, Vilhjálmsson BJ, Seren U, Meng D, Meyer C, Ali Amer M, Borevitz JO, Bergelson J, Nordborg M.

Database (Oxford). 2011 May 23;2011:bar014. doi: 10.1093/database/bar014. Print 2011.

PMID:
21609965
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Source verification of mis-identified Arabidopsis thaliana accessions.

Anastasio AE, Platt A, Horton M, Grotewold E, Scholl R, Borevitz JO, Nordborg M, Bergelson J.

Plant J. 2011 Aug;67(3):554-66. doi: 10.1111/j.1365-313X.2011.04606.x. Epub 2011 Jun 16.

PMID:
21481029
[PubMed - indexed for MEDLINE]
13.

Genetic architecture of regulatory variation in Arabidopsis thaliana.

Zhang X, Cal AJ, Borevitz JO.

Genome Res. 2011 May;21(5):725-33. doi: 10.1101/gr.115337.110. Epub 2011 Apr 5.

PMID:
21467266
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

A coastal cline in sodium accumulation in Arabidopsis thaliana is driven by natural variation of the sodium transporter AtHKT1;1.

Baxter I, Brazelton JN, Yu D, Huang YS, Lahner B, Yakubova E, Li Y, Bergelson J, Borevitz JO, Nordborg M, Vitek O, Salt DE.

PLoS Genet. 2010 Nov 11;6(11):e1001193. doi: 10.1371/journal.pgen.1001193.

PMID:
21085628
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana.

Li Y, Huang Y, Bergelson J, Nordborg M, Borevitz JO.

Proc Natl Acad Sci U S A. 2010 Dec 7;107(49):21199-204. doi: 10.1073/pnas.1007431107. Epub 2010 Nov 15.

PMID:
21078970
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A methyl transferase links the circadian clock to the regulation of alternative splicing.

Sanchez SE, Petrillo E, Beckwith EJ, Zhang X, Rugnone ML, Hernando CE, Cuevas JC, Godoy Herz MA, Depetris-Chauvin A, Simpson CG, Brown JW, Cerdán PD, Borevitz JO, Mas P, Ceriani MF, Kornblihtt AR, Yanovsky MJ.

Nature. 2010 Nov 4;468(7320):112-6. doi: 10.1038/nature09470. Epub 2010 Oct 20.

PMID:
20962777
[PubMed - indexed for MEDLINE]
17.

Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana.

Todesco M, Balasubramanian S, Hu TT, Traw MB, Horton M, Epple P, Kuhns C, Sureshkumar S, Schwartz C, Lanz C, Laitinen RA, Huang Y, Chory J, Lipka V, Borevitz JO, Dangl JL, Bergelson J, Nordborg M, Weigel D.

Nature. 2010 Jun 3;465(7298):632-6. doi: 10.1038/nature09083.

PMID:
20520716
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Within and between whorls: comparative transcriptional profiling of Aquilegia and Arabidopsis.

Voelckel C, Borevitz JO, Kramer EM, Hodges SA.

PLoS One. 2010 Mar 23;5(3):e9735. doi: 10.1371/journal.pone.0009735.

PMID:
20352114
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines.

Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M.

Nature. 2010 Jun 3;465(7298):627-31. doi: 10.1038/nature08800. Epub 2010 Mar 24.

PMID:
20336072
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The scale of population structure in Arabidopsis thaliana.

Platt A, Horton M, Huang YS, Li Y, Anastasio AE, Mulyati NW, Agren J, Bossdorf O, Byers D, Donohue K, Dunning M, Holub EB, Hudson A, Le Corre V, Loudet O, Roux F, Warthmann N, Weigel D, Rivero L, Scholl R, Nordborg M, Bergelson J, Borevitz JO.

PLoS Genet. 2010 Feb 12;6(2):e1000843. doi: 10.1371/journal.pgen.1000843.

PMID:
20169178
[PubMed - indexed for MEDLINE]
Free PMC Article

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