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Items: 14

1.

Novel small RNA (sRNA) landscape of the starvation-stress response transcriptome of Salmonella enterica serovar typhimurium.

Amin SV, Roberts JT, Patterson DG, Coley AB, Allred JA, Denner JM, Johnson JP, Mullen GE, O'Neal TK, Smith JT, Cardin SE, Carr HT, Carr SL, Cowart HE, DaCosta DH, Herring BR, King VM, Polska CJ, Ward EE, Wise AA, McAllister KN, Chevalier D, Spector MP, Borchert GM.

RNA Biol. 2016 Mar 3;13(3):331-42. doi: 10.1080/15476286.2016.1144010. Epub 2016 Feb 6.

PMID:
26853797
2.

An oxidative DNA "damage" and repair mechanism localized in the VEGF promoter is important for hypoxia-induced VEGF mRNA expression.

Pastukh V, Roberts JT, Clark DW, Bardwell GC, Patel M, Al-Mehdi AB, Borchert GM, Gillespie MN.

Am J Physiol Lung Cell Mol Physiol. 2015 Dec 1;309(11):L1367-75. doi: 10.1152/ajplung.00236.2015. Epub 2015 Oct 2.

PMID:
26432868
3.

"On the job" learning: A bioinformatics course incorporating undergraduates in actual research projects and manuscript submissions.

Smith JT, Harris JC, Lopez OJ, Valverde L, Borchert GM.

Biochem Mol Biol Educ. 2015 May-Jun;43(3):154-61. doi: 10.1002/bmb.20848. Epub 2015 Jan 30.

PMID:
25643604
4.

Burgeoning evidence indicates that microRNAs were initially formed from transposable element sequences.

Roberts JT, Cardin SE, Borchert GM.

Mob Genet Elements. 2014 May 22;4:e29255. eCollection 2014. Review.

5.

OMIT: dynamic, semi-automated ontology development for the microRNA domain.

Huang J, Dang J, Borchert GM, Eilbeck K, Zhang H, Xiong M, Jiang W, Wu H, Blake JA, Natale DA, Tan M.

PLoS One. 2014 Jul 15;9(7):e100855. doi: 10.1371/journal.pone.0100855. eCollection 2014.

6.

Continuing analysis of microRNA origins: Formation from transposable element insertions and noncoding RNA mutations.

Roberts JT, Cooper EA, Favreau CJ, Howell JS, Lane LG, Mills JE, Newman DC, Perry TJ, Russell ME, Wallace BM, Borchert GM.

Mob Genet Elements. 2013 Nov 1;3(6):e27755. Epub 2014 Jan 10.

7.

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.

Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, Bruneau BG, Buck LT, Capel B, Castoe TA, Czerwinski M, Delehaunty KD, Edwards SV, Fronick CC, Fujita MK, Fulton L, Graves TA, Green RE, Haerty W, Hariharan R, Hernandez O, Hillier LW, Holloway AK, Janes D, Janzen FJ, Kandoth C, Kong L, de Koning AP, Li Y, Literman R, McGaugh SE, Mork L, O'Laughlin M, Paitz RT, Pollock DD, Ponting CP, Radhakrishnan S, Raney BJ, Richman JM, St John J, Schwartz T, Sethuraman A, Spinks PQ, Storey KB, Thane N, Vinar T, Zimmerman LM, Warren WC, Mardis ER, Wilson RK.

Genome Biol. 2013 Mar 28;14(3):R28. doi: 10.1186/gb-2013-14-3-r28.

8.

OrbId: Origin-based identification of microRNA targets.

Filshtein TJ, Mackenzie CO, Dale MD, Dela-Cruz PS, Ernst DM, Frankenberger EA, He C, Heath KL, Jones AS, Jones DK, King ER, Maher MB, Mitchell TJ, Morgan RR, Sirobhushanam S, Halkyard SD, Tiwari KB, Rubin DA, Borchert GM, Larson ED.

Mob Genet Elements. 2012 Jul 1;2(4):184-192.

9.

G-quadruplex recognition activities of E. Coli MutS.

Ehrat EA, Johnson BR, Williams JD, Borchert GM, Larson ED.

BMC Mol Biol. 2012 Jul 2;13:23. doi: 10.1186/1471-2199-13-23.

10.

Comprehensive analysis of microRNA genomic loci identifies pervasive repetitive-element origins.

Borchert GM, Holton NW, Williams JD, Hernan WL, Bishop IP, Dembosky JA, Elste JE, Gregoire NS, Kim JA, Koehler WW, Lengerich JC, Medema AA, Nguyen MA, Ower GD, Rarick MA, Strong BN, Tardi NJ, Tasker NM, Wozniak DJ, Gatto C, Larson ED.

Mob Genet Elements. 2011 May;1(1):8-17.

11.

Repression of human activation induced cytidine deaminase by miR-93 and miR-155.

Borchert GM, Holton NW, Larson ED.

BMC Cancer. 2011 Aug 10;11:347. doi: 10.1186/1471-2407-11-347.

12.

Histone H2A and H2B are monoubiquitinated at AID-targeted loci.

Borchert GM, Holton NW, Edwards KA, Vogel LA, Larson ED.

PLoS One. 2010 Jul 16;5(7):e11641. doi: 10.1371/journal.pone.0011641.

13.

Adenosine deamination in human transcripts generates novel microRNA binding sites.

Borchert GM, Gilmore BL, Spengler RM, Xing Y, Lanier W, Bhattacharya D, Davidson BL.

Hum Mol Genet. 2009 Dec 15;18(24):4801-7. doi: 10.1093/hmg/ddp443. Epub 2009 Sep 23.

14.

RNA polymerase III transcribes human microRNAs.

Borchert GM, Lanier W, Davidson BL.

Nat Struct Mol Biol. 2006 Dec;13(12):1097-101. Epub 2006 Nov 12.

PMID:
17099701
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