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Results: 1 to 20 of 47

1.

Relevance of different prior knowledge sources for inferring gene interaction networks.

Olsen C, Bontempi G, Emmert-Streib F, Quackenbush J, Haibe-Kains B.

Front Genet. 2014 Jun 24;5:177. doi: 10.3389/fgene.2014.00177. eCollection 2014.

PMID:
25009552
[PubMed]
Free PMC Article
2.

Inference and validation of predictive gene networks from biomedical literature and gene expression data.

Olsen C, Fleming K, Prendergast N, Rubio R, Emmert-Streib F, Bontempi G, Haibe-Kains B, Quackenbush J.

Genomics. 2014 May-Jun;103(5-6):329-36. doi: 10.1016/j.ygeno.2014.03.004. Epub 2014 Mar 29.

PMID:
24691108
[PubMed - in process]
Free Article
3.

Temporal profiling of cytokine-induced genes in pancreatic β-cells by meta-analysis and network inference.

Lopes M, Kutlu B, Miani M, Bang-Berthelsen CH, Størling J, Pociot F, Goodman N, Hood L, Welsh N, Bontempi G, Eizirik DL.

Genomics. 2014 Apr;103(4):264-75. doi: 10.1016/j.ygeno.2013.12.007. Epub 2014 Jan 24.

PMID:
24462878
[PubMed - in process]
4.

Experimental assessment of static and dynamic algorithms for gene regulation inference from time series expression data.

Lopes M, Bontempi G.

Front Genet. 2013 Dec 24;4:303. doi: 10.3389/fgene.2013.00303. eCollection 2013.

PMID:
24400020
[PubMed]
Free PMC Article
5.

Association between the PNPLA3 (rs738409 C>G) variant and hepatocellular carcinoma: Evidence from a meta-analysis of individual participant data.

Trépo E, Nahon P, Bontempi G, Valenti L, Falleti E, Nischalke HD, Hamza S, Corradini SG, Burza MA, Guyot E, Donati B, Spengler U, Hillon P, Toniutto P, Henrion J, Franchimont D, Devière J, Mathurin P, Moreno C, Romeo S, Deltenre P.

Hepatology. 2014 Jun;59(6):2170-7. doi: 10.1002/hep.26767. Epub 2014 Apr 25.

PMID:
24114809
[PubMed - in process]
6.

A comprehensive overview of Infinium HumanMethylation450 data processing.

Dedeurwaerder S, Defrance M, Bizet M, Calonne E, Bontempi G, Fuks F.

Brief Bioinform. 2013 Aug 29. [Epub ahead of print]

PMID:
23990268
[PubMed - as supplied by publisher]
7.

mRMRe: an R package for parallelized mRMR ensemble feature selection.

De Jay N, Papillon-Cavanagh S, Olsen C, El-Hachem N, Bontempi G, Haibe-Kains B.

Bioinformatics. 2013 Sep 15;29(18):2365-8. doi: 10.1093/bioinformatics/btt383. Epub 2013 Jul 3.

PMID:
23825369
[PubMed - indexed for MEDLINE]
8.

[A technological platform for cerebral palsy - the ICT4Rehab project].

Van Sint Jan S, Wermenbol V, Van Bogaert P, Desloovere K, Degelaen M, Dan B, Salvia P, Ortibus E, Bonnechère B, Le Borgne YA, Bontempi G, Vansummeren S, Sholukha V, Moiseev F, Rooze M.

Med Sci (Paris). 2013 May;29(5):529-36. doi: 10.1051/medsci/2013295017. Epub 2013 May 28. French.

PMID:
23732103
[PubMed - indexed for MEDLINE]
9.

Comparison and validation of genomic predictors for anticancer drug sensitivity.

Papillon-Cavanagh S, De Jay N, Hachem N, Olsen C, Bontempi G, Aerts HJ, Quackenbush J, Haibe-Kains B.

J Am Med Inform Assoc. 2013 Jul-Aug;20(4):597-602. doi: 10.1136/amiajnl-2012-001442. Epub 2013 Jan 26.

PMID:
23355484
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

D-peaks: a visual tool to display ChIP-seq peaks along the genome.

Brohée S, Bontempi G.

Transcription. 2012 Sep-Oct;3(5):255-9. doi: 10.4161/trns.22457. Epub 2012 Sep 1.

PMID:
23132505
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A three-gene model to robustly identify breast cancer molecular subtypes.

Haibe-Kains B, Desmedt C, Loi S, Culhane AC, Bontempi G, Quackenbush J, Sotiriou C.

J Natl Cancer Inst. 2012 Feb 22;104(4):311-25. doi: 10.1093/jnci/djr545. Epub 2012 Jan 18.

PMID:
22262870
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Multiple-input multiple-output causal strategies for gene selection.

Bontempi G, Haibe-Kains B, Desmedt C, Sotiriou C, Quackenbush J.

BMC Bioinformatics. 2011 Nov 25;12:458. doi: 10.1186/1471-2105-12-458.

PMID:
22118187
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Predictive networks: a flexible, open source, web application for integration and analysis of human gene networks.

Haibe-Kains B, Olsen C, Djebbari A, Bontempi G, Correll M, Bouton C, Quackenbush J.

Nucleic Acids Res. 2012 Jan;40(Database issue):D866-75. doi: 10.1093/nar/gkr1050. Epub 2011 Nov 16.

PMID:
22096235
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Multifactorial approach to predicting resistance to anthracyclines.

Desmedt C, Di Leo A, de Azambuja E, Larsimont D, Haibe-Kains B, Selleslags J, Delaloge S, Duhem C, Kains JP, Carly B, Maerevoet M, Vindevoghel A, Rouas G, Lallemand F, Durbecq V, Cardoso F, Salgado R, Rovere R, Bontempi G, Michiels S, Buyse M, Nogaret JM, Qi Y, Symmans F, Pusztai L, D'Hondt V, Piccart-Gebhart M, Sotiriou C.

J Clin Oncol. 2011 Apr 20;29(12):1578-86. doi: 10.1200/JCO.2010.31.2231. Epub 2011 Mar 21.

PMID:
21422418
[PubMed - indexed for MEDLINE]
15.

STAT1 is a master regulator of pancreatic {beta}-cell apoptosis and islet inflammation.

Moore F, Naamane N, Colli ML, Bouckenooghe T, Ortis F, Gurzov EN, Igoillo-Esteve M, Mathieu C, Bontempi G, Thykjaer T, Ørntoft TF, Eizirik DL.

J Biol Chem. 2011 Jan 14;286(2):929-41. doi: 10.1074/jbc.M110.162131. Epub 2010 Oct 27.

PMID:
20980260
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Long-term in vitro treatment of human glioblastoma cells with temozolomide increases resistance in vivo through up-regulation of GLUT transporter and aldo-keto reductase enzyme AKR1C expression.

Le Calvé B, Rynkowski M, Le Mercier M, Bruyère C, Lonez C, Gras T, Haibe-Kains B, Bontempi G, Decaestecker C, Ruysschaert JM, Kiss R, Lefranc F.

Neoplasia. 2010 Sep;12(9):727-39. Erratum in: Neoplasia. 2011 Sep;13(9):5 p following 886.

PMID:
20824049
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A fuzzy gene expression-based computational approach improves breast cancer prognostication.

Haibe-Kains B, Desmedt C, Rothé F, Piccart M, Sotiriou C, Bontempi G.

Genome Biol. 2010;11(2):R18. doi: 10.1186/gb-2010-11-2-r18. Epub 2010 Feb 15.

PMID:
20156340
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Long-term temozolomide treatment induces marked amino metabolism modifications and an increase in TMZ sensitivity in Hs683 oligodendroglioma cells.

Lamoral-Theys D, Le Mercier M, Le Calvé B, Rynkowski MA, Bruyère C, Decaestecker C, Haibe-Kains B, Bontempi G, Dubois J, Lefranc F, Kiss R.

Neoplasia. 2010 Jan;12(1):69-79.

PMID:
20072655
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Galectin 1 proangiogenic and promigratory effects in the Hs683 oligodendroglioma model are partly mediated through the control of BEX2 expression.

Le Mercier M, Fortin S, Mathieu V, Roland I, Spiegl-Kreinecker S, Haibe-Kains B, Bontempi G, Decaestecker C, Berger W, Lefranc F, Kiss R.

Neoplasia. 2009 May;11(5):485-96.

PMID:
19412433
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

On the impact of entropy estimation on transcriptional regulatory network inference based on mutual information.

Olsen C, Meyer PE, Bontempi G.

EURASIP J Bioinform Syst Biol. 2009:308959. doi: 10.1155/2009/308959. Epub 2009 Jan 12.

PMID:
19148299
[PubMed]
Free PMC Article

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