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Results: 1 to 20 of 39

1.

Human rhinovirus infection causes different DNA methylation changes in nasal epithelial cells from healthy and asthmatic subjects.

McErlean P, Favoreto S Jr, Costa FF, Shen J, Quraishi J, Biyasheva A, Cooper JJ, Scholtens DM, Vanin EF, de Bonaldo MF, Xie H, Soares MB, Avila PC.

BMC Med Genomics. 2014 Jun 19;7:37. doi: 10.1186/1755-8794-7-37.

PMID:
24947756
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

ANALYSIS OF ALEXANDRIUM TAMARENSE (DINOPHYCEAE) GENES REVEALS THE COMPLEX EVOLUTIONARY HISTORY OF A MICROBIAL EUKARYOTE().

Chan CX, Soares MB, Bonaldo MF, Wisecaver JH, Hackett JD, Anderson DM, Erdner DL, Bhattacharya D.

J Phycol. 2012 Oct 1;48(5):1130-1142. Epub 2012 Jun 19.

PMID:
23066170
[PubMed]
Free PMC Article
3.

Genetic and epigenetic variations contributed by Alu retrotransposition.

de Andrade A, Wang M, Bonaldo MF, Xie H, Soares MB.

BMC Genomics. 2011 Dec 20;12:617. doi: 10.1186/1471-2164-12-617.

PMID:
22185517
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Global demethylation of rat chondrosarcoma cells after treatment with 5-aza-2'-deoxycytidine results in increased tumorigenicity.

Hamm CA, Xie H, Costa FF, Vanin EF, Seftor EA, Sredni ST, Bischof J, Wang D, Bonaldo MF, Hendrix MJ, Soares MB.

PLoS One. 2009 Dec 17;4(12):e8340. doi: 10.1371/journal.pone.0008340.

PMID:
20019818
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Analysis of expressed sequence tags from the four main developmental stages of Trypanosoma congolense.

Helm JR, Hertz-Fowler C, Aslett M, Berriman M, Sanders M, Quail MA, Soares MB, Bonaldo MF, Sakurai T, Inoue N, Donelson JE.

Mol Biochem Parasitol. 2009 Nov;168(1):34-42. doi: 10.1016/j.molbiopara.2009.06.004. Epub 2009 Jun 25.

PMID:
19559733
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Gene discovery in an invasive tephritid model pest species, the Mediterranean fruit fly, Ceratitis capitata.

Gomulski LM, Dimopoulos G, Xi Z, Soares MB, Bonaldo MF, Malacrida AR, Gasperi G.

BMC Genomics. 2008 May 23;9:243. doi: 10.1186/1471-2164-9-243.

PMID:
18500975
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A pig multi-tissue normalised cDNA library: large-scale sequencing, cluster analysis and 9K micro-array resource generation.

Bonnet A, Iannuccelli E, Hugot K, Benne F, Bonaldo MF, Soares MB, Hatey F, Tosser-Klopp G.

BMC Genomics. 2008 Jan 14;9:17. doi: 10.1186/1471-2164-9-17.

PMID:
18194535
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Genome sequence of Aedes aegypti, a major arbovirus vector.

Nene V, Wortman JR, Lawson D, Haas B, Kodira C, Tu ZJ, Loftus B, Xi Z, Megy K, Grabherr M, Ren Q, Zdobnov EM, Lobo NF, Campbell KS, Brown SE, Bonaldo MF, Zhu J, Sinkins SP, Hogenkamp DG, Amedeo P, Arensburger P, Atkinson PW, Bidwell S, Biedler J, Birney E, Bruggner RV, Costas J, Coy MR, Crabtree J, Crawford M, Debruyn B, Decaprio D, Eiglmeier K, Eisenstadt E, El-Dorry H, Gelbart WM, Gomes SL, Hammond M, Hannick LI, Hogan JR, Holmes MH, Jaffe D, Johnston JS, Kennedy RC, Koo H, Kravitz S, Kriventseva EV, Kulp D, Labutti K, Lee E, Li S, Lovin DD, Mao C, Mauceli E, Menck CF, Miller JR, Montgomery P, Mori A, Nascimento AL, Naveira HF, Nusbaum C, O'leary S, Orvis J, Pertea M, Quesneville H, Reidenbach KR, Rogers YH, Roth CW, Schneider JR, Schatz M, Shumway M, Stanke M, Stinson EO, Tubio JM, Vanzee JP, Verjovski-Almeida S, Werner D, White O, Wyder S, Zeng Q, Zhao Q, Zhao Y, Hill CA, Raikhel AS, Soares MB, Knudson DL, Lee NH, Galagan J, Salzberg SL, Paulsen IT, Dimopoulos G, Collins FH, Birren B, Fraser-Liggett CM, Severson DW.

Science. 2007 Jun 22;316(5832):1718-23. Epub 2007 May 17.

PMID:
17510324
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Cyanobacterial contribution to algal nuclear genomes is primarily limited to plastid functions.

Reyes-Prieto A, Hackett JD, Soares MB, Bonaldo MF, Bhattacharya D.

Curr Biol. 2006 Dec 5;16(23):2320-5.

PMID:
17141613
[PubMed - indexed for MEDLINE]
Free Article
10.

Analysis of fat body transcriptome from the adult tsetse fly, Glossina morsitans morsitans.

Attardo GM, Strickler-Dinglasan P, Perkin SA, Caler E, Bonaldo MF, Soares MB, El-Sayeed N, Aksoy S.

Insect Mol Biol. 2006 Aug;15(4):411-24.

PMID:
16907828
[PubMed - indexed for MEDLINE]
11.

Analysis of ESTs from Lutzomyia longipalpis sand flies and their contribution toward understanding the insect-parasite relationship.

Dillon RJ, Ivens AC, Churcher C, Holroyd N, Quail MA, Rogers ME, Soares MB, Bonaldo MF, Casavant TL, Lehane MJ, Bates PA.

Genomics. 2006 Dec;88(6):831-40. Epub 2006 Aug 1.

PMID:
16887324
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Insights into a dinoflagellate genome through expressed sequence tag analysis.

Hackett JD, Scheetz TE, Yoon HS, Soares MB, Bonaldo MF, Casavant TL, Bhattacharya D.

BMC Genomics. 2005 May 29;6:80.

PMID:
15921535
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

1274 full-open reading frames of transcripts expressed in the developing mouse nervous system.

Bonaldo MF, Bair TB, Scheetz TE, Snir E, Akabogu I, Bair JL, Berger B, Crouch K, Davis A, Eyestone ME, Keppel C, Kucaba TA, Lebeck M, Lin JL, de Melo AI, Rehmann J, Reiter RS, Schaefer K, Smith C, Tack D, Trout K, Sheffield VC, Lin JJ, Casavant TL, Soares MB.

Genome Res. 2004 Oct;14(10B):2053-63.

PMID:
15489326
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

High-throughput gene discovery in the rat.

Scheetz TE, Laffin JJ, Berger B, Holte S, Baumes SA, Brown R 2nd, Chang S, Coco J, Conklin J, Crouch K, Donohue M, Doonan G, Estes C, Eyestone M, Fishler K, Gardiner J, Guo L, Johnson B, Keppel C, Kreger R, Lebeck M, Marcelino R, Miljkovich V, Perdue M, Qui L, Rehmann J, Reiter RS, Rhoads B, Schaefer K, Smith C, Sunjevaric I, Trout K, Wu N, Birkett CL, Bischof J, Gackle B, Gavin A, Grundstad AJ, Mokrzycki B, Moressi C, O'Leary B, Pedretti K, Roberts C, Robinson NL, Smith M, Tack D, Trivedi N, Kucaba T, Freeman T, Lin JJ, Bonaldo MF, Casavant TL, Sheffield VC, Soares MB.

Genome Res. 2004 Apr;14(4):733-41.

PMID:
15060017
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Migration of the plastid genome to the nucleus in a peridinin dinoflagellate.

Hackett JD, Yoon HS, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Nosenko T, Bhattacharya D.

Curr Biol. 2004 Feb 3;14(3):213-8.

PMID:
14761653
[PubMed - indexed for MEDLINE]
Free Article
16.

Adult midgut expressed sequence tags from the tsetse fly Glossina morsitans morsitans and expression analysis of putative immune response genes.

Lehane MJ, Aksoy S, Gibson W, Kerhornou A, Berriman M, Hamilton J, Soares MB, Bonaldo MF, Lehane S, Hall N.

Genome Biol. 2003;4(10):R63. Epub 2003 Sep 11.

PMID:
14519198
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Transcriptome analysis of the acoelomate human parasite Schistosoma mansoni.

Verjovski-Almeida S, DeMarco R, Martins EA, Guimarães PE, Ojopi EP, Paquola AC, Piazza JP, Nishiyama MY Jr, Kitajima JP, Adamson RE, Ashton PD, Bonaldo MF, Coulson PS, Dillon GP, Farias LP, Gregorio SP, Ho PL, Leite RA, Malaquias LC, Marques RC, Miyasato PA, Nascimento AL, Ohlweiler FP, Reis EM, Ribeiro MA, Sá RG, Stukart GC, Soares MB, Gargioni C, Kawano T, Rodrigues V, Madeira AM, Wilson RA, Menck CF, Setubal JC, Leite LC, Dias-Neto E.

Nat Genet. 2003 Oct;35(2):148-57. Epub 2003 Sep 14.

PMID:
12973350
[PubMed - indexed for MEDLINE]
18.

ESTprep: preprocessing cDNA sequence reads.

Scheetz TE, Trivedi N, Roberts CA, Kucaba T, Berger B, Robinson NL, Birkett CL, Gavin AJ, O'Leary B, Braun TA, Bonaldo MF, Robinson JP, Sheffield VC, Soares MB, Casavant TL.

Bioinformatics. 2003 Jul 22;19(11):1318-24.

PMID:
12874042
[PubMed - indexed for MEDLINE]
Free Article
19.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.

Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T, Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P, Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH, Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW, Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW, Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U, Smailus DE, Schnerch A, Schein JE, Jones SJ, Marra MA; Mammalian Gene Collection Program Team.

Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

PMID:
12477932
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Annotated expressed sequence tags and cDNA microarrays for studies of brain and behavior in the honey bee.

Whitfield CW, Band MR, Bonaldo MF, Kumar CG, Liu L, Pardinas JR, Robertson HM, Soares MB, Robinson GE.

Genome Res. 2002 Apr;12(4):555-66.

PMID:
11932240
[PubMed - indexed for MEDLINE]
Free PMC Article

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