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Results: 9

1.

Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum.

Veluchamy A, Lin X, Maumus F, Rivarola M, Bhavsar J, Creasy T, O'Brien K, Sengamalay NA, Tallon LJ, Smith AD, Rayko E, Ahmed I, Le Crom S, Farrant GK, Sgro JY, Olson SA, Bondurant SS, Allen AE, Rabinowicz PD, Sussman MR, Bowler C, Tirichine L.

Nat Commun. 2013;4:2091. doi: 10.1038/ncomms3091. Erratum in: Nat Commun. 2014;5:3028. Allen, Andrew [corrected to Allen, Andrew E].

PMID:
23820484
[PubMed - indexed for MEDLINE]
2.

Significant alteration of gene expression in wood decay fungi Postia placenta and Phanerochaete chrysosporium by plant species.

Vanden Wymelenberg A, Gaskell J, Mozuch M, BonDurant SS, Sabat G, Ralph J, Skyba O, Mansfield SD, Blanchette RA, Grigoriev IV, Kersten PJ, Cullen D.

Appl Environ Microbiol. 2011 Jul;77(13):4499-507. doi: 10.1128/AEM.00508-11. Epub 2011 May 6.

PMID:
21551287
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion.

Martinez D, Challacombe J, Morgenstern I, Hibbett D, Schmoll M, Kubicek CP, Ferreira P, Ruiz-Duenas FJ, Martinez AT, Kersten P, Hammel KE, Vanden Wymelenberg A, Gaskell J, Lindquist E, Sabat G, Bondurant SS, Larrondo LF, Canessa P, Vicuna R, Yadav J, Doddapaneni H, Subramanian V, Pisabarro AG, Lavín JL, Oguiza JA, Master E, Henrissat B, Coutinho PM, Harris P, Magnuson JK, Baker SE, Bruno K, Kenealy W, Hoegger PJ, Kües U, Ramaiya P, Lucas S, Salamov A, Shapiro H, Tu H, Chee CL, Misra M, Xie G, Teter S, Yaver D, James T, Mokrejs M, Pospisek M, Grigoriev IV, Brettin T, Rokhsar D, Berka R, Cullen D.

Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1954-9. doi: 10.1073/pnas.0809575106. Epub 2009 Feb 4.

PMID:
19193860
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Acid and base stress and transcriptomic responses in Bacillus subtilis.

Wilks JC, Kitko RD, Cleeton SH, Lee GE, Ugwu CS, Jones BD, BonDurant SS, Slonczewski JL.

Appl Environ Microbiol. 2009 Feb;75(4):981-90. doi: 10.1128/AEM.01652-08. Epub 2008 Dec 29.

PMID:
19114526
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Rapid acid treatment of Escherichia coli: transcriptomic response and recovery.

Kannan G, Wilks JC, Fitzgerald DM, Jones BD, Bondurant SS, Slonczewski JL.

BMC Microbiol. 2008 Feb 26;8:37. doi: 10.1186/1471-2180-8-37.

PMID:
18302792
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Whole-genome expression profiling of the marine diatom Thalassiosira pseudonana identifies genes involved in silicon bioprocesses.

Mock T, Samanta MP, Iverson V, Berthiaume C, Robison M, Holtermann K, Durkin C, Bondurant SS, Richmond K, Rodesch M, Kallas T, Huttlin EL, Cerrina F, Sussman MR, Armbrust EV.

Proc Natl Acad Sci U S A. 2008 Feb 5;105(5):1579-84. doi: 10.1073/pnas.0707946105. Epub 2008 Jan 22.

PMID:
18212125
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Oxygen limitation modulates pH regulation of catabolism and hydrogenases, multidrug transporters, and envelope composition in Escherichia coli K-12.

Hayes ET, Wilks JC, Sanfilippo P, Yohannes E, Tate DP, Jones BD, Radmacher MD, BonDurant SS, Slonczewski JL.

BMC Microbiol. 2006 Oct 6;6:89.

PMID:
17026754
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Microarrays (DNA chips) for the classroom laboratory.

Barnard B, Sussman M, Bondurant SS, Nienhuis J, Krysan P.

Biochem Mol Biol Educ. 2006 Sep;34(5):355-9. doi: 10.1002/bmb.2006.494034052645.

PMID:
21638718
[PubMed]
9.

pH regulates genes for flagellar motility, catabolism, and oxidative stress in Escherichia coli K-12.

Maurer LM, Yohannes E, Bondurant SS, Radmacher M, Slonczewski JL.

J Bacteriol. 2005 Jan;187(1):304-19.

PMID:
15601715
[PubMed - indexed for MEDLINE]
Free PMC Article

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