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Results: 6

1.

SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information.

Boetzer M, Pirovano W.

BMC Bioinformatics. 2014 Jun 20;15:211. doi: 10.1186/1471-2105-15-211.

PMID:
24950923
[PubMed - in process]
Free PMC Article
2.

The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system.

Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, W├╝ster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pla D, Sanz L, Hyder AS, Ribeiro JM, Arntzen JW, van den Thillart GE, Boetzer M, Pirovano W, Dirks RP, Spaink HP, Duboule D, McGlinn E, Kini RM, Richardson MK.

Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20651-6. doi: 10.1073/pnas.1314702110. Epub 2013 Dec 2.

PMID:
24297900
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

First draft genome sequence of the Japanese eel, Anguilla japonica.

Henkel CV, Dirks RP, de Wijze DL, Minegishi Y, Aoyama J, Jansen HJ, Turner B, Knudsen B, Bundgaard M, Hvam KL, Boetzer M, Pirovano W, Weltzien FA, Dufour S, Tsukamoto K, Spaink HP, van den Thillart GE.

Gene. 2012 Dec 15;511(2):195-201. doi: 10.1016/j.gene.2012.09.064. Epub 2012 Sep 29.

PMID:
23026207
[PubMed - indexed for MEDLINE]
Free Article
4.

Toward almost closed genomes with GapFiller.

Boetzer M, Pirovano W.

Genome Biol. 2012 Jun 25;13(6):R56. doi: 10.1186/gb-2012-13-6-r56.

PMID:
22731987
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Scaffolding pre-assembled contigs using SSPACE.

Boetzer M, Henkel CV, Jansen HJ, Butler D, Pirovano W.

Bioinformatics. 2011 Feb 15;27(4):578-9. doi: 10.1093/bioinformatics/btq683. Epub 2010 Dec 12.

PMID:
21149342
[PubMed - indexed for MEDLINE]
Free Article
6.

Integrated analysis of DNA copy number and gene expression microarray data using gene sets.

Menezes RX, Boetzer M, Sieswerda M, van Ommen GJ, Boer JM.

BMC Bioinformatics. 2009 Jun 29;10:203. doi: 10.1186/1471-2105-10-203.

PMID:
19563656
[PubMed - indexed for MEDLINE]
Free PMC Article

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