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Results: 1 to 20 of 40

1.

RNAssess-a web server for quality assessment of RNA 3D structures.

Lukasiak P, Antczak M, Ratajczak T, Szachniuk M, Popenda M, Adamiak RW, Blazewicz J.

Nucleic Acids Res. 2015 Jul 1;43(W1):W502-6. doi: 10.1093/nar/gkv557. Epub 2015 Jun 11.

2.

Automated 3D RNA structure prediction using the RNAComposer method for riboswitches.

Purzycka KJ, Popenda M, Szachniuk M, Antczak M, Lukasiak P, Blazewicz J, Adamiak RW.

Methods Enzymol. 2015;553:3-34. doi: 10.1016/bs.mie.2014.10.050. Epub 2015 Feb 4.

PMID:
25726459
3.

Sorting signal targeting mRNA into hepatic extracellular vesicles.

Szostak N, Royo F, Rybarczyk A, Szachniuk M, Blazewicz J, del Sol A, Falcon-Perez JM.

RNA Biol. 2014;11(7):836-44. doi: 10.4161/rna.29305. Epub 2014 Jun 12.

4.

RNApdbee--a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs.

Antczak M, Zok T, Popenda M, Lukasiak P, Adamiak RW, Blazewicz J, Szachniuk M.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W368-72. doi: 10.1093/nar/gku330. Epub 2014 Apr 25.

5.

ModeLang: a new approach for experts-friendly viral infections modeling.

Wasik S, Prejzendanc T, Blazewicz J.

Comput Math Methods Med. 2013;2013:320715. doi: 10.1155/2013/320715. Epub 2013 Dec 18.

6.

Multi-agent model of hepatitis C virus infection.

Wasik S, Jackowiak P, Figlerowicz M, Blazewicz J.

Artif Intell Med. 2014 Feb;60(2):123-31. doi: 10.1016/j.artmed.2013.11.001. Epub 2013 Nov 11.

PMID:
24309221
7.

RNAlyzer--novel approach for quality analysis of RNA structural models.

Lukasiak P, Antczak M, Ratajczak T, Bujnicki JM, Szachniuk M, Adamiak RW, Popenda M, Blazewicz J.

Nucleic Acids Res. 2013 Jul;41(12):5978-90. doi: 10.1093/nar/gkt318. Epub 2013 Apr 25.

8.

[Beta-glucan as a natural anticancer agent].

Jurczyńska E, Saczko J, Kulbacka J, Kawa-Rygielska J, Błazewicz J.

Pol Merkur Lekarski. 2012 Oct;33(196):217-20. Review. Polish.

PMID:
23272610
9.

GeVaDSs - decision support system for novel Genetic Vaccine development process.

Blazewicz J, Borowski M, Chaara W, Kedziora P, Klatzmann D, Lukasiak P, Six A, Wojciechowski P.

BMC Bioinformatics. 2012 May 10;13:91. doi: 10.1186/1471-2105-13-91.

10.

Automated 3D structure composition for large RNAs.

Popenda M, Szachniuk M, Antczak M, Purzycka KJ, Lukasiak P, Bartol N, Blazewicz J, Adamiak RW.

Nucleic Acids Res. 2012 Aug;40(14):e112. doi: 10.1093/nar/gks339. Epub 2012 Apr 26.

11.

Protein alignment algorithms with an efficient backtracking routine on multiple GPUs.

Blazewicz J, Frohmberg W, Kierzynka M, Pesch E, Wojciechowski P.

BMC Bioinformatics. 2011 May 20;12:181. doi: 10.1186/1471-2105-12-181.

12.

RNA partial degradation problem: motivation, complexity, algorithm.

Blazewicz J, Figlerowicz M, Kasprzak M, Nowacka M, Rybarczyk A.

J Comput Biol. 2011 Jun;18(6):821-34. doi: 10.1089/cmb.2010.0153. Epub 2011 May 12.

PMID:
21563977
13.

Some aspects of the anemia of chronic disorders modeled and analyzed by petri net based approach.

Formanowicz D, Sackmann A, Kozak A, Błażewicz J, Formanowicz P.

Bioprocess Biosyst Eng. 2011 Jun;34(5):581-95. doi: 10.1007/s00449-010-0507-6. Epub 2011 Jan 8.

14.

Hepatitis C virus quasispecies in chronically infected children subjected to interferon-ribavirin therapy.

Figlerowicz M, Jackowiak P, Formanowicz P, Kędziora P, Alejska M, Malinowska N, Błażewicz J, Figlerowicz M.

Arch Virol. 2010 Dec;155(12):1977-87. doi: 10.1007/s00705-010-0789-7. Epub 2010 Sep 15.

15.

Towards prediction of HCV therapy efficiency.

Wasik S, Jackowiak P, Krawczyk JB, Kedziora P, Formanowicz P, Figlerowicz M, Błazewicz J.

Comput Math Methods Med. 2010 Jun;11(2):185-99. doi: 10.1080/17486700903170712.

PMID:
20461597
16.

RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures.

Popenda M, Szachniuk M, Blazewicz M, Wasik S, Burke EK, Blazewicz J, Adamiak RW.

BMC Bioinformatics. 2010 May 6;11:231. doi: 10.1186/1471-2105-11-231.

17.

Whole genome assembly from 454 sequencing output via modified DNA graph concept.

Blazewicz J, Bryja M, Figlerowicz M, Gawron P, Kasprzak M, Kirton E, Platt D, Przybytek J, Swiercz A, Szajkowski L.

Comput Biol Chem. 2009 Jun;33(3):224-30. doi: 10.1016/j.compbiolchem.2009.04.005. Epub 2009 May 3.

PMID:
19477687
18.

Translational and structural analysis of the shortest legume ENOD40 gene in Lupinus luteus.

Podkowinski J, Zmienko A, Florek B, Wojciechowski P, Rybarczyk A, Wrzesinski J, Ciesiolka J, Blazewicz J, Kondorosi A, Crespi M, Legocki A.

Acta Biochim Pol. 2009;56(1):89-102. Epub 2009 Mar 14.

19.

New insights into the human body iron metabolism analyzed by a Petri net based approach.

Sackmann A, Formanowicz D, Formanowicz P, Blazewicz J.

Biosystems. 2009 Apr;96(1):104-13. doi: 10.1016/j.biosystems.2008.12.003. Epub 2008 Dec 27.

PMID:
19152828
20.

Simplified partial digest problem: enumerative and dynamic programming algorithms.

Blazewicz J, Burke E, Kasprzak M, Kovalev A, Kovalyov M.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Oct-Dec;4(4):668-80.

PMID:
17975277
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