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Items: 1 to 20 of 226

1.

No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini.

Koutsovoulos G, Kumar S, Laetsch DR, Stevens L, Daub J, Conlon C, Maroon H, Thomas F, Aboobaker AA, Blaxter M.

Proc Natl Acad Sci U S A. 2016 Mar 24. pii: 201600338. [Epub ahead of print]

2.

How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

Schurch NJ, Schofield P, Gierliński M, Cole C, Sherstnev A, Singh V, Wrobel N, Gharbi K, Simpson GG, Owen-Hughes T, Blaxter M, Barton GJ.

RNA. 2016 Mar 28. [Epub ahead of print]

3.

Formin Is Associated with Left-Right Asymmetry in the Pond Snail and the Frog.

Davison A, McDowell GS, Holden JM, Johnson HF, Koutsovoulos GD, Liu MM, Hulpiau P, Van Roy F, Wade CM, Banerjee R, Yang F, Chiba S, Davey JW, Jackson DJ, Levin M, Blaxter ML.

Curr Biol. 2016 Mar 7;26(5):654-60. doi: 10.1016/j.cub.2015.12.071. Epub 2016 Feb 25.

4.

A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data.

Risse J, Thomson M, Patrick S, Blakely G, Koutsovoulos G, Blaxter M, Watson M.

Gigascience. 2015 Dec 4;4:60. doi: 10.1186/s13742-015-0101-6. eCollection 2015.

5.

Supergroup C Wolbachia, mutualist symbionts of filarial nematodes, have a distinct genome structure.

Comandatore F, Cordaux R, Bandi C, Blaxter M, Darby A, Makepeace BL, Montagna M, Sassera D.

Open Biol. 2015 Dec;5(12):150099. doi: 10.1098/rsob.150099.

6.

A metagenetic approach to determine the diversity and distribution of cyst nematodes at the level of the country, the field and the individual.

Eves-van den Akker S, Lilley CJ, Reid A, Pickup J, Anderson E, Cock PJ, Blaxter M, Urwin PE, Jones JT, Blok VC.

Mol Ecol. 2015 Dec;24(23):5842-51. doi: 10.1111/mec.13434.

PMID:
26607216
7.

A supergene determines highly divergent male reproductive morphs in the ruff.

Küpper C, Stocks M, Risse JE, Dos Remedios N, Farrell LL, McRae SB, Morgan TC, Karlionova N, Pinchuk P, Verkuil YI, Kitaysky AS, Wingfield JC, Piersma T, Zeng K, Slate J, Blaxter M, Lank DB, Burke T.

Nat Genet. 2016 Jan;48(1):79-83. doi: 10.1038/ng.3443. Epub 2015 Nov 16.

PMID:
26569125
8.

Oviposition but Not Sex Allocation Is Associated with Transcriptomic Changes in Females of the Parasitoid Wasp Nasonia vitripennis.

Cook N, Trivedi U, Pannebakker BA, Blaxter M, Ritchie MG, Tauber E, Sneddon T, Shuker DM.

G3 (Bethesda). 2015 Oct 28;5(12):2885-92. doi: 10.1534/g3.115.021220.

9.

Erratum: Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity.

Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM.

Nat Commun. 2015 Oct 22;6:8772. doi: 10.1038/ncomms9772. No abstract available.

10.

ReproPhylo: An Environment for Reproducible Phylogenomics.

Szitenberg A, John M, Blaxter ML, Lunt DH.

PLoS Comput Biol. 2015 Sep 3;11(9):e1004447. doi: 10.1371/journal.pcbi.1004447. eCollection 2015 Sep.

11.

Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment.

Gierliński M, Cole C, Schofield P, Schurch NJ, Sherstnev A, Singh V, Wrobel N, Gharbi K, Simpson G, Owen-Hughes T, Blaxter M, Barton GJ.

Bioinformatics. 2015 Nov 15;31(22):3625-30. doi: 10.1093/bioinformatics/btv425. Epub 2015 Jul 23.

12.

The genomes of two key bumblebee species with primitive eusocial organization.

Sadd BM, Barribeau SM, Bloch G, de Graaf DC, Dearden P, Elsik CG, Gadau J, Grimmelikhuijzen CJ, Hasselmann M, Lozier JD, Robertson HM, Smagghe G, Stolle E, Van Vaerenbergh M, Waterhouse RM, Bornberg-Bauer E, Klasberg S, Bennett AK, Câmara F, Guigó R, Hoff K, Mariotti M, Munoz-Torres M, Murphy T, Santesmasses D, Amdam GV, Beckers M, Beye M, Biewer M, Bitondi MM, Blaxter ML, Bourke AF, Brown MJ, Buechel SD, Cameron R, Cappelle K, Carolan JC, Christiaens O, Ciborowski KL, Clarke DF, Colgan TJ, Collins DH, Cridge AG, Dalmay T, Dreier S, du Plessis L, Duncan E, Erler S, Evans J, Falcon T, Flores K, Freitas FC, Fuchikawa T, Gempe T, Hartfelder K, Hauser F, Helbing S, Humann FC, Irvine F, Jermiin LS, Johnson CE, Johnson RM, Jones AK, Kadowaki T, Kidner JH, Koch V, Köhler A, Kraus FB, Lattorff HM, Leask M, Lockett GA, Mallon EB, Antonio DS, Marxer M, Meeus I, Moritz RF, Nair A, Näpflin K, Nissen I, Niu J, Nunes FM, Oakeshott JG, Osborne A, Otte M, Pinheiro DG, Rossié N, Rueppell O, Santos CG, Schmid-Hempel R, Schmitt BD, Schulte C, Simões ZL, Soares MP, Swevers L, Winnebeck EC, Wolschin F, Yu N, Zdobnov EM, Aqrawi PK, Blankenburg KP, Coyle M, Francisco L, Hernandez AG, Holder M, Hudson ME, Jackson L, Jayaseelan J, Joshi V, Kovar C, Lee SL, Mata R, Mathew T, Newsham IF, Ngo R, Okwuonu G, Pham C, Pu LL, Saada N, Santibanez J, Simmons D, Thornton R, Venkat A, Walden KK, Wu YQ, Debyser G, Devreese B, Asher C, Blommaert J, Chipman AD, Chittka L, Fouks B, Liu J, O'Neill MP, Sumner S, Puiu D, Qu J, Salzberg SL, Scherer SE, Muzny DM, Richards S, Robinson GE, Gibbs RA, Schmid-Hempel P, Worley KC.

Genome Biol. 2015 Apr 24;16:76. doi: 10.1186/s13059-015-0623-3.

13.

A conserved set of maternal genes? Insights from a molluscan transcriptome.

Liu MM, Davey JW, Jackson DJ, Blaxter ML, Davison A.

Int J Dev Biol. 2014;58(6-8):501-11. doi: 10.1387/ijdb.140121ad.

14.

Ancient and novel small RNA pathways compensate for the loss of piRNAs in multiple independent nematode lineages.

Sarkies P, Selkirk ME, Jones JT, Blok V, Boothby T, Goldstein B, Hanelt B, Ardila-Garcia A, Fast NM, Schiffer PM, Kraus C, Taylor MJ, Koutsovoulos G, Blaxter ML, Miska EA.

PLoS Biol. 2015 Feb 10;13(2):e1002061. doi: 10.1371/journal.pbio.1002061. eCollection 2015 Feb.

15.

Extracellular Onchocerca-derived small RNAs in host nodules and blood.

Quintana JF, Makepeace BL, Babayan SA, Ivens A, Pfarr KM, Blaxter M, Debrah A, Wanji S, Ngangyung HF, Bah GS, Tanya VN, Taylor DW, Hoerauf A, Buck AH.

Parasit Vectors. 2015 Jan 27;8:58. doi: 10.1186/s13071-015-0656-1.

16.

Transcriptome analyses of Anguillicola crassus from native and novel hosts.

Heitlinger E, Taraschewski H, Weclawski U, Gharbi K, Blaxter M.

PeerJ. 2014 Nov 27;2:e684. doi: 10.7717/peerj.684. eCollection 2014.

17.

Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity.

Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM.

Nat Commun. 2014 Nov 25;5:5488. doi: 10.1038/ncomms6488. Erratum in: Nat Commun. 2015;6:8772.

18.

The evolution of tyrosine-recombinase elements in Nematoda.

Szitenberg A, Koutsovoulos G, Blaxter ML, Lunt DH.

PLoS One. 2014 Sep 8;9(9):e106630. doi: 10.1371/journal.pone.0106630. eCollection 2014.

19.

poRe: an R package for the visualization and analysis of nanopore sequencing data.

Watson M, Thomson M, Risse J, Talbot R, Santoyo-Lopez J, Gharbi K, Blaxter M.

Bioinformatics. 2015 Jan 1;31(1):114-5. doi: 10.1093/bioinformatics/btu590. Epub 2014 Aug 29.

20.

The evolution of parasitism in Nematoda.

Blaxter M, Koutsovoulos G.

Parasitology. 2015 Feb;142 Suppl 1:S26-39. doi: 10.1017/S0031182014000791. Epub 2014 Jun 25. Review.

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