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Items: 1 to 20 of 140

1.

Aphelochaeta (Polychaeta: Cirratulidae) from the Pacific coast of Costa Rica, with a description of five new species.

Dean HK, Blake JA.

Zootaxa. 2016 Apr 12;4103(2):101-16. doi: 10.11646/zootaxa.4103.2.1.

PMID:
27394621
2.

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.

Diehl AD, Meehan TF, Bradford YM, Brush MH, Dahdul WM, Dougall DS, He Y, Osumi-Sutherland D, Ruttenberg A, Sarntivijai S, Van Slyke CE, Vasilevsky NA, Haendel MA, Blake JA, Mungall CJ.

J Biomed Semantics. 2016 Jul 4;7(1):44. doi: 10.1186/s13326-016-0088-7.

3.

Gene regulation knowledge commons: community action takes care of DNA binding transcription factors.

Tripathi S, Vercruysse S, Chawla K, Christie KR, Blake JA, Huntley RP, Orchard S, Hermjakob H, Thommesen L, Lægreid A, Kuiper M.

Database (Oxford). 2016 Jun 5;2016. pii: baw088. doi: 10.1093/database/baw088. Print 2016.

4.

OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data.

Huang J, Gutierrez F, Strachan HJ, Dou D, Huang W, Smith B, Blake JA, Eilbeck K, Natale DA, Lin Y, Wu B, Silva Nd, Wang X, Liu Z, Borchert GM, Tan M, Ruttenberg A.

J Biomed Semantics. 2016 May 10;7:25. doi: 10.1186/s13326-016-0064-2. eCollection 2016.

5.

The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology.

Huang J, Eilbeck K, Smith B, Blake JA, Dou D, Huang W, Natale DA, Ruttenberg A, Huan J, Zimmermann MT, Jiang G, Lin Y, Wu B, Strachan HJ, He Y, Zhang S, Wang X, Liu Z, Borchert GM, Tan M.

J Biomed Semantics. 2016 May 4;7:24. doi: 10.1186/s13326-016-0066-0. eCollection 2016.

6.
8.

Mouse genome database 2016.

Bult CJ, Eppig JT, Blake JA, Kadin JA, Richardson JE; Mouse Genome Database Group.

Nucleic Acids Res. 2016 Jan 4;44(D1):D840-7. doi: 10.1093/nar/gkv1211. Epub 2015 Nov 17.

9.

The Orbiniidae (Annelida: Polychaeta) of Pacific Costa Rica.

Dean HK, Blake JA.

Zootaxa. 2015 May 8;3956(2):183-98. doi: 10.11646/zootaxa.3956.2.2.

PMID:
26248913
10.

Mouse Genome Informatics (MGI): reflecting on 25 years.

Eppig JT, Richardson JE, Kadin JA, Ringwald M, Blake JA, Bult CJ.

Mamm Genome. 2015 Aug;26(7-8):272-84. doi: 10.1007/s00335-015-9589-4. Epub 2015 Aug 4. Review.

11.

Orthology for comparative genomics in the mouse genome database.

Dolan ME, Baldarelli RM, Bello SM, Ni L, McAndrews MS, Bult CJ, Kadin JA, Richardson JE, Ringwald M, Eppig JT, Blake JA.

Mamm Genome. 2015 Aug;26(7-8):305-13. doi: 10.1007/s00335-015-9588-5. Epub 2015 Jul 30. Review.

12.

Mouse Genome Database: From sequence to phenotypes and disease models.

Eppig JT, Richardson JE, Kadin JA, Smith CL, Blake JA, Bult CJ; MGD Team.

Genesis. 2015 Aug;53(8):458-73. doi: 10.1002/dvg.22874. Epub 2015 Jul 27. Review.

13.

Application of comparative biology in GO functional annotation: the mouse model.

Drabkin HJ, Christie KR, Dolan ME, Hill DP, Ni L, Sitnikov D, Blake JA.

Mamm Genome. 2015 Oct;26(9-10):574-83. doi: 10.1007/s00335-015-9580-0. Epub 2015 Jul 4.

15.

Finding our way through phenotypes.

Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, Das S, Dececchi TA, Dettai A, Diogo R, Druzinsky RE, Dumontier M, Franz NM, Friedrich F, Gkoutos GV, Haendel M, Harmon LJ, Hayamizu TF, He Y, Hines HM, Ibrahim N, Jackson LM, Jaiswal P, James-Zorn C, Köhler S, Lecointre G, Lapp H, Lawrence CJ, Le Novère N, Lundberg JG, Macklin J, Mast AR, Midford PE, Mikó I, Mungall CJ, Oellrich A, Osumi-Sutherland D, Parkinson H, Ramírez MJ, Richter S, Robinson PN, Ruttenberg A, Schulz KS, Segerdell E, Seltmann KC, Sharkey MJ, Smith AD, Smith B, Specht CD, Squires RB, Thacker RW, Thessen A, Fernandez-Triana J, Vihinen M, Vize PD, Vogt L, Wall CE, Walls RL, Westerfeld M, Wharton RA, Wirkner CS, Woolley JB, Yoder MJ, Zorn AM, Mabee P.

PLoS Biol. 2015 Jan 6;13(1):e1002033. doi: 10.1371/journal.pbio.1002033. eCollection 2015 Jan.

16.

Methodology for the inference of gene function from phenotype data.

Ascensao JA, Dolan ME, Hill DP, Blake JA.

BMC Bioinformatics. 2014 Dec 12;15:405. doi: 10.1186/s12859-014-0405-z.

17.

The Mouse Genome Database (MGD): facilitating mouse as a model for human biology and disease.

Eppig JT, Blake JA, Bult CJ, Kadin JA, Richardson JE; Mouse Genome Database Group.

Nucleic Acids Res. 2015 Jan;43(Database issue):D726-36. doi: 10.1093/nar/gku967. Epub 2014 Oct 27.

18.

Standardized description of scientific evidence using the Evidence Ontology (ECO).

Chibucos MC, Mungall CJ, Balakrishnan R, Christie KR, Huntley RP, White O, Blake JA, Lewis SE, Giglio M.

Database (Oxford). 2014 Jul 22;2014. pii: bau075. doi: 10.1093/database/bau075. Print 2014.

19.

OMIT: dynamic, semi-automated ontology development for the microRNA domain.

Huang J, Dang J, Borchert GM, Eilbeck K, Zhang H, Xiong M, Jiang W, Wu H, Blake JA, Natale DA, Tan M.

PLoS One. 2014 Jul 15;9(7):e100855. doi: 10.1371/journal.pone.0100855. eCollection 2014.

20.

Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.

Haendel MA, Balhoff JP, Bastian FB, Blackburn DC, Blake JA, Bradford Y, Comte A, Dahdul WM, Dececchi TA, Druzinsky RE, Hayamizu TF, Ibrahim N, Lewis SE, Mabee PM, Niknejad A, Robinson-Rechavi M, Sereno PC, Mungall CJ.

J Biomed Semantics. 2014 May 19;5:21. doi: 10.1186/2041-1480-5-21. eCollection 2014.

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