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Results: 9

1.

Large-scale event extraction from literature with multi-level gene normalization.

Van Landeghem S, Björne J, Wei CH, Hakala K, Pyysalo S, Ananiadou S, Kao HY, Lu Z, Salakoski T, Van de Peer Y, Ginter F.

PLoS One. 2013 Apr 17;8(4):e55814. doi: 10.1371/journal.pone.0055814. Print 2013.

PMID:
23613707
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A large-scale evaluation of computational protein function prediction.

Radivojac P, Clark WT, Oron TR, Schnoes AM, Wittkop T, Sokolov A, Graim K, Funk C, Verspoor K, Ben-Hur A, Pandey G, Yunes JM, Talwalkar AS, Repo S, Souza ML, Piovesan D, Casadio R, Wang Z, Cheng J, Fang H, Gough J, Koskinen P, Törönen P, Nokso-Koivisto J, Holm L, Cozzetto D, Buchan DW, Bryson K, Jones DT, Limaye B, Inamdar H, Datta A, Manjari SK, Joshi R, Chitale M, Kihara D, Lisewski AM, Erdin S, Venner E, Lichtarge O, Rentzsch R, Yang H, Romero AE, Bhat P, Paccanaro A, Hamp T, Kaßner R, Seemayer S, Vicedo E, Schaefer C, Achten D, Auer F, Boehm A, Braun T, Hecht M, Heron M, Hönigschmid P, Hopf TA, Kaufmann S, Kiening M, Krompass D, Landerer C, Mahlich Y, Roos M, Björne J, Salakoski T, Wong A, Shatkay H, Gatzmann F, Sommer I, Wass MN, Sternberg MJ, Škunca N, Supek F, Bošnjak M, Panov P, Džeroski S, Šmuc T, Kourmpetis YA, van Dijk AD, ter Braak CJ, Zhou Y, Gong Q, Dong X, Tian W, Falda M, Fontana P, Lavezzo E, Di Camillo B, Toppo S, Lan L, Djuric N, Guo Y, Vucetic S, Bairoch A, Linial M, Babbitt PC, Brenner SE, Orengo C, Rost B, Mooney SD, Friedberg I.

Nat Methods. 2013 Mar;10(3):221-7. doi: 10.1038/nmeth.2340. Epub 2013 Jan 27.

PMID:
23353650
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Semantically linking molecular entities in literature through entity relationships.

Van Landeghem S, Björne J, Abeel T, De Baets B, Salakoski T, Van de Peer Y.

BMC Bioinformatics. 2012 Jun 26;13 Suppl 11:S6. doi: 10.1186/1471-2105-13-S11-S6.

PMID:
22759460
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

University of Turku in the BioNLP'11 Shared Task.

Björne J, Ginter F, Salakoski T.

BMC Bioinformatics. 2012 Jun 26;13 Suppl 11:S4. doi: 10.1186/1471-2105-13-S11-S4.

PMID:
22759458
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

U-Compare bio-event meta-service: compatible BioNLP event extraction services.

Kano Y, Björne J, Ginter F, Salakoski T, Buyko E, Hahn U, Cohen KB, Verspoor K, Roeder C, Hunter LE, Kilicoglu H, Bergler S, Van Landeghem S, Van Parys T, Van de Peer Y, Miwa M, Ananiadou S, Neves M, Pascual-Montano A, Özgür A, Radev DR, Riedel S, Sætre R, Chun HW, Kim JD, Pyysalo S, Ohta T, Tsujii J.

BMC Bioinformatics. 2011 Dec 18;12:481. doi: 10.1186/1471-2105-12-481.

PMID:
22177292
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Complex event extraction at PubMed scale.

Björne J, Ginter F, Pyysalo S, Tsujii J, Salakoski T.

Bioinformatics. 2010 Jun 15;26(12):i382-90. doi: 10.1093/bioinformatics/btq180.

PMID:
20529932
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning.

Airola A, Pyysalo S, Björne J, Pahikkala T, Ginter F, Salakoski T.

BMC Bioinformatics. 2008 Nov 19;9 Suppl 11:S2. doi: 10.1186/1471-2105-9-S11-S2.

PMID:
19025688
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Comparative analysis of five protein-protein interaction corpora.

Pyysalo S, Airola A, Heimonen J, Björne J, Ginter F, Salakoski T.

BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S6. doi: 10.1186/1471-2105-9-S3-S6.

PMID:
18426551
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

BioInfer: a corpus for information extraction in the biomedical domain.

Pyysalo S, Ginter F, Heimonen J, Björne J, Boberg J, Järvinen J, Salakoski T.

BMC Bioinformatics. 2007 Feb 9;8:50.

PMID:
17291334
[PubMed - indexed for MEDLINE]
Free PMC Article

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