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Genomics and disease resistance studies in livestock.

Bishop SC, Woolliams JA.

Livest Sci. 2014 Aug;166:190-198.


Genetic resistance to infections in sheep.

Bishop SC.

Vet Microbiol. 2015 Jul 15. pii: S0378-1135(15)00275-8. doi: 10.1016/j.vetmic.2015.07.013. [Epub ahead of print]


Exploring the utility of cross-laboratory RAD-sequencing datasets for phylogenetic analysis.

Gonen S, Bishop SC, Houston RD.

BMC Res Notes. 2015 Jul 8;8:299. doi: 10.1186/s13104-015-1261-2.


Hui and Walter's latent-class model extended to estimate diagnostic test properties from surveillance data: a latent model for latent data.

Bermingham ML, Handel IG, Glass EJ, Woolliams JA, de Clare Bronsvoort BM, McBride SH, Skuce RA, Allen AR, McDowell SW, Bishop SC.

Sci Rep. 2015 Jul 7;5:11861. doi: 10.1038/srep11861.


Using model-based proposals for fast parameter inference on discrete state space, continuous-time Markov processes.

Pooley CM, Bishop SC, Marion G.

J R Soc Interface. 2015 Jun 6;12(107). pii: 20150225. doi: 10.1098/rsif.2015.0225.


Mapping and validation of a major QTL affecting resistance to pancreas disease (salmonid alphavirus) in Atlantic salmon (Salmo salar).

Gonen S, Baranski M, Thorland I, Norris A, Grove H, Arnesen P, Bakke H, Lien S, Bishop SC, Houston RD.

Heredity (Edinb). 2015 May 20. doi: 10.1038/hdy.2015.37. [Epub ahead of print]


The genetic architecture of growth and fillet traits in farmed Atlantic salmon (Salmo salar).

Tsai HY, Hamilton A, Guy DR, Tinch AE, Bishop SC, Houston RD.

BMC Genet. 2015 May 19;16:51. doi: 10.1186/s12863-015-0215-y.


Genetic analysis of reproductive traits and antibody response in a PRRS outbreak herd.

Serão NV, Matika O, Kemp RA, Harding JC, Bishop SC, Plastow GS, Dekkers JC.

J Anim Sci. 2014 Jul;92(7):2905-21. doi: 10.2527/jas.2014-7821. Epub 2014 May 30.


Genomic prediction for tuberculosis resistance in dairy cattle.

Tsairidou S, Woolliams JA, Allen AR, Skuce RA, McBride SH, Wright DM, Bermingham ML, Pong-Wong R, Matika O, McDowell SW, Glass EJ, Bishop SC.

PLoS One. 2014 May 8;9(5):e96728. doi: 10.1371/journal.pone.0096728. eCollection 2014.


Effect and mode of action of the Texel muscling QTL (TM-QTL) on carcass traits in purebred Texel lambs.

Macfarlane JM, Lambe NR, Matika O, Johnson PL, Wolf BT, Haresign W, Bishop SC, Bünger L.

Animal. 2014 Jul;8(7):1053-61. doi: 10.1017/S1751731114001104. Epub 2014 May 7.


Accuracy of genomic prediction within and across populations for nematode resistance and body weight traits in sheep.

Riggio V, Abdel-Aziz M, Matika O, Moreno CR, Carta A, Bishop SC.

Animal. 2014 Apr;8(4):520-8. doi: 10.1017/S1751731114000081.


Linkage maps of the Atlantic salmon (Salmo salar) genome derived from RAD sequencing.

Gonen S, Lowe NR, Cezard T, Gharbi K, Bishop SC, Houston RD.

BMC Genomics. 2014 Feb 27;15:166. doi: 10.1186/1471-2164-15-166.


Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar).

Houston RD, Taggart JB, Cézard T, Bekaert M, Lowe NR, Downing A, Talbot R, Bishop SC, Archibald AL, Bron JE, Penman DJ, Davassi A, Brew F, Tinch AE, Gharbi K, Hamilton A.

BMC Genomics. 2014 Feb 6;15:90. doi: 10.1186/1471-2164-15-90.


Genome-wide association study identifies novel loci associated with resistance to bovine tuberculosis.

Bermingham ML, Bishop SC, Woolliams JA, Pong-Wong R, Allen AR, McBride SH, Ryder JJ, Wright DM, Skuce RA, McDowell SW, Glass EJ.

Heredity (Edinb). 2014 May;112(5):543-51. doi: 10.1038/hdy.2013.137. Epub 2014 Feb 5.


The utility of low-density genotyping for imputation in the Thoroughbred horse.

Corbin LJ, Kranis A, Blott SC, Swinburne JE, Vaudin M, Bishop SC, Woolliams JA.

Genet Sel Evol. 2014 Feb 4;46:9. doi: 10.1186/1297-9686-46-9.


A joint analysis to identify loci underlying variation in nematode resistance in three European sheep populations.

Riggio V, Pong-Wong R, Sallé G, Usai MG, Casu S, Moreno CR, Matika O, Bishop SC.

J Anim Breed Genet. 2014 Dec;131(6):426-36. doi: 10.1111/jbg.12071. Epub 2014 Jan 8.


Why breeding values estimated using familial data should not be used for genome-wide association studies.

Ekine CC, Rowe SJ, Bishop SC, de Koning DJ.

G3 (Bethesda). 2014 Feb 19;4(2):341-7. doi: 10.1534/g3.113.008706.


Quantitative analysis of porcine reproductive and respiratory syndrome (PRRS) viremia profiles from experimental infection: a statistical modelling approach.

Islam ZU, Bishop SC, Savill NJ, Rowland RR, Lunney JK, Trible B, Doeschl-Wilson AB.

PLoS One. 2013 Dec 17;8(12):e83567. doi: 10.1371/journal.pone.0083567. eCollection 2013.


A SNP in the 5' flanking region of the myostatin-1b gene is associated with harvest traits in Atlantic salmon (Salmo salar).

Peñaloza C, Hamilton A, Guy DR, Bishop SC, Houston RD.

BMC Genet. 2013 Nov 27;14:112. doi: 10.1186/1471-2156-14-112.


Field-isolated genotypes of Mycobacterium bovis vary in virulence and influence case pathology but do not affect outbreak size.

Wright DM, Allen AR, Mallon TR, McDowell SW, Bishop SC, Glass EJ, Bermingham ML, Woolliams JA, Skuce RA.

PLoS One. 2013 Sep 23;8(9):e74503. doi: 10.1371/journal.pone.0074503. eCollection 2013.

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