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Results: 16

1.

The parkinson's disease-associated LRRK2 mutation R1441G inhibits neuronal differentiation of neural stem cells.

Bahnassawy L, Nicklas S, Palm T, Menzl I, Birzele F, Gillardon F, Schwamborn JC.

Stem Cells Dev. 2013 Sep 15;22(18):2487-96. doi: 10.1089/scd.2013.0163. Epub 2013 May 24.

PMID:
23600457
[PubMed - indexed for MEDLINE]
2.

Analysis of the transcriptome of differentiating and non-differentiating preadipocytes from rats and humans by next generation sequencing.

Birzele F, Fässler S, Neubauer H, Hildebrandt T, Hamilton BS.

Mol Cell Biochem. 2012 Oct;369(1-2):175-81. doi: 10.1007/s11010-012-1380-1. Epub 2012 Jul 8.

PMID:
22773307
[PubMed - indexed for MEDLINE]
3.

Viral transcriptome analysis of feline immunodeficiency virus infected cells using second generation sequencing technology.

Ertl R, Birzele F, Hildebrandt T, Klein D.

Vet Immunol Immunopathol. 2011 Oct 15;143(3-4):314-24. doi: 10.1016/j.vetimm.2011.06.010. Epub 2011 Jun 22.

PMID:
21742384
[PubMed - indexed for MEDLINE]
4.

Next-generation insights into regulatory T cells: expression profiling and FoxP3 occupancy in Human.

Birzele F, Fauti T, Stahl H, Lenter MC, Simon E, Knebel D, Weith A, Hildebrandt T, Mennerich D.

Nucleic Acids Res. 2011 Oct;39(18):7946-60. doi: 10.1093/nar/gkr444. Epub 2011 Jul 4.

PMID:
21729870
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Per-arnt-sim (PAS) domain-containing protein kinase is downregulated in human islets in type 2 diabetes and regulates glucagon secretion.

da Silva Xavier G, Farhan H, Kim H, Caxaria S, Johnson P, Hughes S, Bugliani M, Marselli L, Marchetti P, Birzele F, Sun G, Scharfmann R, Rutter J, Siniakowicz K, Weir G, Parker H, Reimann F, Gribble FM, Rutter GA.

Diabetologia. 2011 Apr;54(4):819-27. doi: 10.1007/s00125-010-2010-7. Epub 2010 Dec 23.

PMID:
21181396
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Improving structure alignment-based prediction of SCOP families using Vorolign kernels.

Hamp T, Birzele F, Buchwald F, Kramer S.

Bioinformatics. 2011 Jan 15;27(2):204-10. doi: 10.1093/bioinformatics/btq618. Epub 2010 Nov 18.

PMID:
21098432
[PubMed - indexed for MEDLINE]
Free Article
7.

Into the unknown: expression profiling without genome sequence information in CHO by next generation sequencing.

Birzele F, Schaub J, Rust W, Clemens C, Baum P, Kaufmann H, Weith A, Schulz TW, Hildebrandt T.

Nucleic Acids Res. 2010 Jul;38(12):3999-4010. doi: 10.1093/nar/gkq116. Epub 2010 Mar 1.

PMID:
20194116
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Systematic comparison of SCOP and CATH: a new gold standard for protein structure analysis.

Csaba G, Birzele F, Zimmer R.

BMC Struct Biol. 2009 Apr 17;9:23. doi: 10.1186/1472-6807-9-23.

PMID:
19374763
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Protein structure alignment considering phenotypic plasticity.

Csaba G, Birzele F, Zimmer R.

Bioinformatics. 2008 Aug 15;24(16):i98-104. doi: 10.1093/bioinformatics/btn271.

PMID:
18689847
[PubMed - indexed for MEDLINE]
Free Article
10.

Alternative splicing and protein structure evolution.

Birzele F, Csaba G, Zimmer R.

Nucleic Acids Res. 2008 Feb;36(2):550-8. Epub 2007 Nov 30.

PMID:
18055499
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

ProSAS: a database for analyzing alternative splicing in the context of protein structures.

Birzele F, Küffner R, Meier F, Oefinger F, Potthast C, Zimmer R.

Nucleic Acids Res. 2008 Jan;36(Database issue):D63-8. Epub 2007 Oct 11.

PMID:
17933774
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

AutoPSI: a database for automatic structural classification of protein sequences and structures.

Birzele F, Gewehr JE, Zimmer R.

Nucleic Acids Res. 2008 Jan;36(Database issue):D398-401. Epub 2007 Oct 11.

PMID:
17932066
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Vorolign--fast structural alignment using Voronoi contacts.

Birzele F, Gewehr JE, Csaba G, Zimmer R.

Bioinformatics. 2007 Jan 15;23(2):e205-11.

PMID:
17237093
[PubMed - indexed for MEDLINE]
Free Article
14.

A new representation for protein secondary structure prediction based on frequent patterns.

Birzele F, Kramer S.

Bioinformatics. 2006 Nov 1;22(21):2628-34. Epub 2006 Aug 29.

PMID:
16940325
[PubMed - indexed for MEDLINE]
Free Article
15.

QUASAR--scoring and ranking of sequence-structure alignments.

Birzele F, Gewehr JE, Zimmer R.

Bioinformatics. 2005 Dec 15;21(24):4425-6. Epub 2005 Oct 10.

PMID:
16216828
[PubMed - indexed for MEDLINE]
Free Article
16.

PRIME: a graphical interface for integrating genomic/proteomic databases.

Facius A, Englbrecht C, Birzele F, Groscurth A, Benjamin S, Wanka S, Mewes W.

Proteomics. 2005 Jan;5(1):76-80.

PMID:
15744835
[PubMed - indexed for MEDLINE]

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