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Results: 20

1.

MDM2 antagonist clinical response association with a gene expression signature in acute myeloid leukaemia.

Zhong H, Chen G, Jukofsky L, Geho D, Han SW, Birzele F, Bader S, Himmelein L, Cai J, Albertyn Z, Rothe M, Essioux L, Burtscher H, Middleton SA, Rueger R, Chen LC, Dangl M, Nichols G, Pierceall WE.

Br J Haematol. 2015 Apr 8. doi: 10.1111/bjh.13411. [Epub ahead of print] No abstract available.

PMID:
25855517
2.

CD44 isoform status predicts response to treatment with anti-CD44 antibody in cancer patients.

Birzele F, Voss E, Nopora A, Honold K, Heil F, Lohmann S, Verheul HM, Le Tourneau C, Delord JP, van Herpen CM, Mahalingam D, Coveler AL, Meresse Naegelen V, Weigand S, Runza V, Cannarile M.

Clin Cancer Res. 2015 Mar 11. pii: clincanres.2141.2014. [Epub ahead of print]

PMID:
25762343
3.

Circulating tumor DNA and circulating tumor cells in metastatic triple negative breast cancer patients.

Madic J, Kiialainen A, Bidard FC, Birzele F, Ramey G, Leroy Q, Rio Frio T, Vaucher I, Raynal V, Bernard V, Lermine A, Clausen I, Giroud N, Schmucki R, Milder M, Horn C, Spleiss O, Lantz O, Stern MH, Pierga JY, Weisser M, Lebofsky R.

Int J Cancer. 2015 May 1;136(9):2158-65. doi: 10.1002/ijc.29265. Epub 2014 Oct 23.

PMID:
25307450
4.

LKB1 and AMPK differentially regulate pancreatic β-cell identity.

Kone M, Pullen TJ, Sun G, Ibberson M, Martinez-Sanchez A, Sayers S, Nguyen-Tu MS, Kantor C, Swisa A, Dor Y, Gorman T, Ferrer J, Thorens B, Reimann F, Gribble F, McGinty JA, Chen L, French PM, Birzele F, Hildebrandt T, Uphues I, Rutter GA.

FASEB J. 2014 Nov;28(11):4972-85. doi: 10.1096/fj.14-257667. Epub 2014 Jul 28.

PMID:
25070369
5.

The parkinson's disease-associated LRRK2 mutation R1441G inhibits neuronal differentiation of neural stem cells.

Bahnassawy L, Nicklas S, Palm T, Menzl I, Birzele F, Gillardon F, Schwamborn JC.

Stem Cells Dev. 2013 Sep 15;22(18):2487-96. doi: 10.1089/scd.2013.0163. Epub 2013 May 24.

PMID:
23600457
6.

Analysis of the transcriptome of differentiating and non-differentiating preadipocytes from rats and humans by next generation sequencing.

Birzele F, Fässler S, Neubauer H, Hildebrandt T, Hamilton BS.

Mol Cell Biochem. 2012 Oct;369(1-2):175-81. doi: 10.1007/s11010-012-1380-1. Epub 2012 Jul 8.

PMID:
22773307
7.

Viral transcriptome analysis of feline immunodeficiency virus infected cells using second generation sequencing technology.

Ertl R, Birzele F, Hildebrandt T, Klein D.

Vet Immunol Immunopathol. 2011 Oct 15;143(3-4):314-24. doi: 10.1016/j.vetimm.2011.06.010. Epub 2011 Jun 22.

PMID:
21742384
8.

Next-generation insights into regulatory T cells: expression profiling and FoxP3 occupancy in Human.

Birzele F, Fauti T, Stahl H, Lenter MC, Simon E, Knebel D, Weith A, Hildebrandt T, Mennerich D.

Nucleic Acids Res. 2011 Oct;39(18):7946-60. doi: 10.1093/nar/gkr444. Epub 2011 Jul 4.

9.

Per-arnt-sim (PAS) domain-containing protein kinase is downregulated in human islets in type 2 diabetes and regulates glucagon secretion.

da Silva Xavier G, Farhan H, Kim H, Caxaria S, Johnson P, Hughes S, Bugliani M, Marselli L, Marchetti P, Birzele F, Sun G, Scharfmann R, Rutter J, Siniakowicz K, Weir G, Parker H, Reimann F, Gribble FM, Rutter GA.

Diabetologia. 2011 Apr;54(4):819-27. doi: 10.1007/s00125-010-2010-7. Epub 2010 Dec 23.

10.

Improving structure alignment-based prediction of SCOP families using Vorolign kernels.

Hamp T, Birzele F, Buchwald F, Kramer S.

Bioinformatics. 2011 Jan 15;27(2):204-10. doi: 10.1093/bioinformatics/btq618. Epub 2010 Nov 18.

11.

Into the unknown: expression profiling without genome sequence information in CHO by next generation sequencing.

Birzele F, Schaub J, Rust W, Clemens C, Baum P, Kaufmann H, Weith A, Schulz TW, Hildebrandt T.

Nucleic Acids Res. 2010 Jul;38(12):3999-4010. doi: 10.1093/nar/gkq116. Epub 2010 Mar 1.

12.

Systematic comparison of SCOP and CATH: a new gold standard for protein structure analysis.

Csaba G, Birzele F, Zimmer R.

BMC Struct Biol. 2009 Apr 17;9:23. doi: 10.1186/1472-6807-9-23.

13.

Protein structure alignment considering phenotypic plasticity.

Csaba G, Birzele F, Zimmer R.

Bioinformatics. 2008 Aug 15;24(16):i98-104. doi: 10.1093/bioinformatics/btn271.

14.

Alternative splicing and protein structure evolution.

Birzele F, Csaba G, Zimmer R.

Nucleic Acids Res. 2008 Feb;36(2):550-8. Epub 2007 Nov 30.

15.

ProSAS: a database for analyzing alternative splicing in the context of protein structures.

Birzele F, Küffner R, Meier F, Oefinger F, Potthast C, Zimmer R.

Nucleic Acids Res. 2008 Jan;36(Database issue):D63-8. Epub 2007 Oct 11.

16.

AutoPSI: a database for automatic structural classification of protein sequences and structures.

Birzele F, Gewehr JE, Zimmer R.

Nucleic Acids Res. 2008 Jan;36(Database issue):D398-401. Epub 2007 Oct 11.

17.

Vorolign--fast structural alignment using Voronoi contacts.

Birzele F, Gewehr JE, Csaba G, Zimmer R.

Bioinformatics. 2007 Jan 15;23(2):e205-11.

18.

A new representation for protein secondary structure prediction based on frequent patterns.

Birzele F, Kramer S.

Bioinformatics. 2006 Nov 1;22(21):2628-34. Epub 2006 Aug 29.

19.

QUASAR--scoring and ranking of sequence-structure alignments.

Birzele F, Gewehr JE, Zimmer R.

Bioinformatics. 2005 Dec 15;21(24):4425-6. Epub 2005 Oct 10.

20.

PRIME: a graphical interface for integrating genomic/proteomic databases.

Facius A, Englbrecht C, Birzele F, Groscurth A, Benjamin S, Wanka S, Mewes W.

Proteomics. 2005 Jan;5(1):76-80.

PMID:
15744835
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