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Items: 1 to 20 of 116

1.

Microbial Genomics of a Host-Associated Commensal Bacterium in Fragmented Populations of Endangered Takahe.

Grange ZL, Gartrell BD, Biggs PJ, Nelson NJ, Anderson M, French NP.

Microb Ecol. 2015 Dec 26. [Epub ahead of print]

PMID:
26707136
2.

Draft Genome Sequences of Three Strains of Geobacillus stearothermophilus Isolated from a Milk Powder Manufacturing Plant.

Burgess SA, Cox MP, Flint SH, Lindsay D, Biggs PJ.

Genome Announc. 2015 Oct 15;3(5). pii: e00939-15. doi: 10.1128/genomeA.00939-15.

3.

Whole Genome Sequencing demonstrates that Geographic Variation of Escherichia coli O157 Genotypes Dominates Host Association.

Strachan NJ, Rotariu O, Lopes B, MacRae M, Fairley S, Laing C, Gannon V, Allison LJ, Hanson MF, Dallman T, Ashton P, Franz E, van Hoek AH, French NP, George T, Biggs PJ, Forbes KJ.

Sci Rep. 2015 Oct 7;5:14145. doi: 10.1038/srep14145.

4.

Seasonality of Campylobacter jejuni isolates associated with human campylobacteriosis in the Manawatu region, New Zealand.

Friedrich A, Marshall JC, Biggs PJ, Midwinter AC, French NP.

Epidemiol Infect. 2016 Mar;144(4):820-8. doi: 10.1017/S0950268815002009. Epub 2015 Sep 7.

PMID:
26344515
5.

Using a common commensal bacterium in endangered Takahe as a model to explore pathogen dynamics in isolated wildlife populations.

Grange ZL, Gartrell BD, Biggs PJ, Nelson NJ, Marshall JC, Howe L, Balm MG, French NP.

Conserv Biol. 2015 Oct;29(5):1327-36. doi: 10.1111/cobi.12521. Epub 2015 May 11.

PMID:
25963514
6.

Biochar in co-contaminated soil manipulates arsenic solubility and microbiological community structure, and promotes organochlorine degradation.

Gregory SJ, Anderson CW, Camps-Arbestain M, Biggs PJ, Ganley AR, O'Sullivan JM, McManus MT.

PLoS One. 2015 Apr 29;10(4):e0125393. doi: 10.1371/journal.pone.0125393. eCollection 2015.

7.

Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling.

Lindgreen S, Umu SU, Lai AS, Eldai H, Liu W, McGimpsey S, Wheeler NE, Biggs PJ, Thomson NR, Barquist L, Poole AM, Gardner PP.

PLoS Comput Biol. 2014 Oct 30;10(10):e1003907. doi: 10.1371/journal.pcbi.1003907. eCollection 2014 Oct.

8.

Quantification of historical livestock importation into New Zealand 1860-1979.

Binney BM, Biggs PJ, Carter PE, Holland BR, French NP.

N Z Vet J. 2014 Nov;62(6):309-14. doi: 10.1080/00480169.2014.914861. Epub 2014 Jun 26. Erratum in: N Z Vet J. 2015 Nov;63(6):347. Holland, B M [corrected to Holland, B R].

PMID:
24869627
9.

Outcomes in a multi-institutional cohort of patients treated with intraoperative radiation therapy for advanced or recurrent renal cell carcinoma.

Paly JJ, Hallemeier CL, Biggs PJ, Niemierko A, Roeder F, Martínez-Monge R, Whitson J, Calvo FA, Fastner G, Sedlmayer F, Wong WW, Ellis RJ, Haddock MG, Choo R, Shipley WU, Zietman AL, Efstathiou JA.

Int J Radiat Oncol Biol Phys. 2014 Mar 1;88(3):618-23. doi: 10.1016/j.ijrobp.2013.11.207. Epub 2014 Jan 8.

PMID:
24411190
10.

Semi-automatic selection of summary statistics for ABC model choice.

Prangle D, Fearnhead P, Cox MP, Biggs PJ, French NP.

Stat Appl Genet Mol Biol. 2014 Feb;13(1):67-82. doi: 10.1515/sagmb-2013-0012.

PMID:
24323893
11.

Identification of chloroplast genome loci suitable for high-resolution phylogeographic studies of Colocasia esculenta (L.) Schott (Araceae) and closely related taxa.

Ahmed I, Matthews PJ, Biggs PJ, Naeem M, McLenachan PA, Lockhart PJ.

Mol Ecol Resour. 2013 Sep;13(5):929-37. doi: 10.1111/1755-0998.12128. Epub 2013 May 30.

PMID:
23718317
12.

Environmental bio-monitoring with high-throughput sequencing.

Wang J, McLenachan PA, Biggs PJ, Winder LH, Schoenfeld BI, Narayan VV, Phiri BJ, Lockhart PJ.

Brief Bioinform. 2013 Sep;14(5):575-88. doi: 10.1093/bib/bbt032. Epub 2013 May 15. Review.

13.

Mutational dynamics of aroid chloroplast genomes.

Ahmed I, Biggs PJ, Matthews PJ, Collins LJ, Hendy MD, Lockhart PJ.

Genome Biol Evol. 2012;4(12):1316-23. doi: 10.1093/gbe/evs110.

14.

Extensive intra-host genetic diversity uncovered in Cryptosporidium parvum using Next Generation Sequencing.

Grinberg A, Biggs PJ, Dukkipati VS, George TT.

Infect Genet Evol. 2013 Apr;15:18-24. doi: 10.1016/j.meegid.2012.08.017. Epub 2012 Sep 6.

PMID:
22981926
15.

De novo sequence assembly and characterisation of a partial transcriptome for an evolutionarily distinct reptile, the tuatara (Sphenodon punctatus).

Miller HC, Biggs PJ, Voelckel C, Nelson NJ.

BMC Genomics. 2012 Aug 31;13:439. doi: 10.1186/1471-2164-13-439.

16.

The evolutionary root of flowering plants.

Goremykin VV, Nikiforova SV, Biggs PJ, Zhong B, Delange P, Martin W, Woetzel S, Atherton RA, McLenachan PA, Lockhart PJ.

Syst Biol. 2013 Jan 1;62(1):50-61. doi: 10.1093/sysbio/sys070. Epub 2012 Jul 31.

PMID:
22851550
17.

Identification of a novel nidovirus associated with a neurological disease of the Australian brushtail possum (Trichosurus vulpecula).

Dunowska M, Biggs PJ, Zheng T, Perrott MR.

Vet Microbiol. 2012 May 4;156(3-4):418-24. doi: 10.1016/j.vetmic.2011.11.013. Epub 2011 Nov 25.

PMID:
22153843
18.

Whole-genome comparison of two Campylobacter jejuni isolates of the same sequence type reveals multiple loci of different ancestral lineage.

Biggs PJ, Fearnhead P, Hotter G, Mohan V, Collins-Emerson J, Kwan E, Besser TE, Cookson A, Carter PE, French NP.

PLoS One. 2011;6(11):e27121. doi: 10.1371/journal.pone.0027121. Epub 2011 Nov 11.

19.

Systematic error in seed plant phylogenomics.

Zhong B, Deusch O, Goremykin VV, Penny D, Biggs PJ, Atherton RA, Nikiforova SV, Lockhart PJ.

Genome Biol Evol. 2011;3:1340-8. doi: 10.1093/gbe/evr105. Epub 2011 Oct 19.

20.

RNA networks in prokaryotes II: tRNA processing and small RNAs.

Collins LJ, Biggs PJ.

Adv Exp Med Biol. 2011;722:221-30. doi: 10.1007/978-1-4614-0332-6_14.

PMID:
21915792
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