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Results: 1 to 20 of 110

1.

Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling.

Lindgreen S, Umu SU, Lai AS, Eldai H, Liu W, McGimpsey S, Wheeler NE, Biggs PJ, Thomson NR, Barquist L, Poole AM, Gardner PP.

PLoS Comput Biol. 2014 Oct 30;10(10):e1003907. doi: 10.1371/journal.pcbi.1003907. eCollection 2014 Oct.

2.

Quantification of historical livestock importation into New Zealand 1860-1979.

Binney BM, Biggs PJ, Carter PE, Holland BM, French NP.

N Z Vet J. 2014 Nov;62(6):309-14. doi: 10.1080/00480169.2014.914861. Epub 2014 Jun 26.

PMID:
24869627
3.

Outcomes in a multi-institutional cohort of patients treated with intraoperative radiation therapy for advanced or recurrent renal cell carcinoma.

Paly JJ, Hallemeier CL, Biggs PJ, Niemierko A, Roeder F, Martínez-Monge R, Whitson J, Calvo FA, Fastner G, Sedlmayer F, Wong WW, Ellis RJ, Haddock MG, Choo R, Shipley WU, Zietman AL, Efstathiou JA.

Int J Radiat Oncol Biol Phys. 2014 Mar 1;88(3):618-23. doi: 10.1016/j.ijrobp.2013.11.207. Epub 2014 Jan 8.

PMID:
24411190
4.

Semi-automatic selection of summary statistics for ABC model choice.

Prangle D, Fearnhead P, Cox MP, Biggs PJ, French NP.

Stat Appl Genet Mol Biol. 2014 Feb;13(1):67-82. doi: 10.1515/sagmb-2013-0012.

PMID:
24323893
5.

Identification of chloroplast genome loci suitable for high-resolution phylogeographic studies of Colocasia esculenta (L.) Schott (Araceae) and closely related taxa.

Ahmed I, Matthews PJ, Biggs PJ, Naeem M, McLenachan PA, Lockhart PJ.

Mol Ecol Resour. 2013 Sep;13(5):929-37. doi: 10.1111/1755-0998.12128. Epub 2013 May 30.

PMID:
23718317
6.

Environmental bio-monitoring with high-throughput sequencing.

Wang J, McLenachan PA, Biggs PJ, Winder LH, Schoenfeld BI, Narayan VV, Phiri BJ, Lockhart PJ.

Brief Bioinform. 2013 Sep;14(5):575-88. doi: 10.1093/bib/bbt032. Epub 2013 May 15. Review.

PMID:
23677899
7.

Mutational dynamics of aroid chloroplast genomes.

Ahmed I, Biggs PJ, Matthews PJ, Collins LJ, Hendy MD, Lockhart PJ.

Genome Biol Evol. 2012;4(12):1316-23. doi: 10.1093/gbe/evs110.

8.

Extensive intra-host genetic diversity uncovered in Cryptosporidium parvum using Next Generation Sequencing.

Grinberg A, Biggs PJ, Dukkipati VS, George TT.

Infect Genet Evol. 2013 Apr;15:18-24. doi: 10.1016/j.meegid.2012.08.017. Epub 2012 Sep 6.

PMID:
22981926
9.

De novo sequence assembly and characterisation of a partial transcriptome for an evolutionarily distinct reptile, the tuatara (Sphenodon punctatus).

Miller HC, Biggs PJ, Voelckel C, Nelson NJ.

BMC Genomics. 2012 Aug 31;13:439. doi: 10.1186/1471-2164-13-439.

10.

The evolutionary root of flowering plants.

Goremykin VV, Nikiforova SV, Biggs PJ, Zhong B, Delange P, Martin W, Woetzel S, Atherton RA, McLenachan PA, Lockhart PJ.

Syst Biol. 2013 Jan 1;62(1):50-61. doi: 10.1093/sysbio/sys070. Epub 2012 Jul 31.

PMID:
22851550
11.

Identification of a novel nidovirus associated with a neurological disease of the Australian brushtail possum (Trichosurus vulpecula).

Dunowska M, Biggs PJ, Zheng T, Perrott MR.

Vet Microbiol. 2012 May 4;156(3-4):418-24. doi: 10.1016/j.vetmic.2011.11.013. Epub 2011 Nov 25.

PMID:
22153843
12.

Whole-genome comparison of two Campylobacter jejuni isolates of the same sequence type reveals multiple loci of different ancestral lineage.

Biggs PJ, Fearnhead P, Hotter G, Mohan V, Collins-Emerson J, Kwan E, Besser TE, Cookson A, Carter PE, French NP.

PLoS One. 2011;6(11):e27121. doi: 10.1371/journal.pone.0027121. Epub 2011 Nov 11.

13.

Systematic error in seed plant phylogenomics.

Zhong B, Deusch O, Goremykin VV, Penny D, Biggs PJ, Atherton RA, Nikiforova SV, Lockhart PJ.

Genome Biol Evol. 2011;3:1340-8. doi: 10.1093/gbe/evr105. Epub 2011 Oct 19.

14.

RNA networks in prokaryotes II: tRNA processing and small RNAs.

Collins LJ, Biggs PJ.

Adv Exp Med Biol. 2011;722:221-30. doi: 10.1007/978-1-4614-0332-6_14.

PMID:
21915792
15.

RNA networks in prokaryotes I: CRISPRs and riboswitches.

Biggs PJ, Collins LJ.

Adv Exp Med Biol. 2011;722:209-20. doi: 10.1007/978-1-4614-0332-6_13.

PMID:
21915791
16.

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data.

Cox MP, Peterson DA, Biggs PJ.

BMC Bioinformatics. 2010 Sep 27;11:485. doi: 10.1186/1471-2105-11-485.

17.

Index-free de novo assembly and deconvolution of mixed mitochondrial genomes.

McComish BJ, Hills SF, Biggs PJ, Penny D.

Genome Biol Evol. 2010 Jul 12;2:410-24. doi: 10.1093/gbe/evq029.

18.

High throughput genome-wide survey of small RNAs from the parasitic protists Giardia intestinalis and Trichomonas vaginalis.

Chen XS, Collins LJ, Biggs PJ, Penny D.

Genome Biol Evol. 2009 Jul 6;1:165-75. doi: 10.1093/gbe/evp017.

19.

Do angles of obliquity apply to 30 degrees scattered radiation from megavoltage beams?

Biggs PJ, Styczynski JR.

Health Phys. 2008 Oct;95(4):425-32. doi: 10.1097/01.HP.0000319905.27506.88.

PMID:
18784515
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