Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 29

1.

ProbeSelect: selecting differentially expressed probes in transcriptional profile data.

Hosur R, Szak S, Thai A, Allaire N, Bienkowska J.

Bioinformatics. 2014 Feb 15;30(4):574-5. doi: 10.1093/bioinformatics/btt720. Epub 2013 Dec 13.

PMID:
24336808
[PubMed - indexed for MEDLINE]
Free PMC Article
2.
3.

A computational framework for boosting confidence in high-throughput protein-protein interaction datasets.

Hosur R, Peng J, Vinayagam A, Stelzl U, Xu J, Perrimon N, Bienkowska J, Berger B.

Genome Biol. 2012 Aug 31;13(8):R76. [Epub ahead of print]

PMID:
22937800
[PubMed - as supplied by publisher]
Free PMC Article
4.

Lymphotoxin-beta receptor blockade reduces CXCL13 in lacrimal glands and improves corneal integrity in the NOD model of Sjögren's syndrome.

Fava RA, Kennedy SM, Wood SG, Bolstad AI, Bienkowska J, Papandile A, Kelly JA, Mavragani CP, Gatumu M, Skarstein K, Browning JL.

Arthritis Res Ther. 2011;13(6):R182. doi: 10.1186/ar3507. Epub 2011 Nov 1.

PMID:
22044682
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Causal modeling using network ensemble simulations of genetic and gene expression data predicts genes involved in rheumatoid arthritis.

Xing H, McDonagh PD, Bienkowska J, Cashorali T, Runge K, Miller RE, Decaprio D, Church B, Roubenoff R, Khalil IG, Carulli J.

PLoS Comput Biol. 2011 Mar;7(3):e1001105. doi: 10.1371/journal.pcbi.1001105. Epub 2011 Mar 10.

PMID:
21423713
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

iWRAP: An interface threading approach with application to prediction of cancer-related protein-protein interactions.

Hosur R, Xu J, Bienkowska J, Berger B.

J Mol Biol. 2011 Feb 4;405(5):1295-310. doi: 10.1016/j.jmb.2010.11.025. Epub 2010 Dec 3.

PMID:
21130772
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Convergent Random Forest predictor: methodology for predicting drug response from genome-scale data applied to anti-TNF response.

Bienkowska JR, Dalgin GS, Batliwalla F, Allaire N, Roubenoff R, Gregersen PK, Carulli JP.

Genomics. 2009 Dec;94(6):423-32. doi: 10.1016/j.ygeno.2009.08.008. Epub 2009 Aug 20.

PMID:
19699293
[PubMed - indexed for MEDLINE]
Free Article
8.

Serious diabetes-specific emotional problems in patients with type 2 diabetes who have different levels of comorbid depression: a Polish study from the European Depression in Diabetes (EDID) Research Consortium.

Kokoszka A, Pouwer F, Jodko A, Radzio R, Mućko P, Bieńkowska J, Kuligowska E, Smoczyńska O, Skłodowska Z.

Eur Psychiatry. 2009 Oct;24(7):425-30. doi: 10.1016/j.eurpsy.2009.04.002. Epub 2009 Jun 21.

PMID:
19541457
[PubMed - indexed for MEDLINE]
9.

Optimal contact map alignment of protein-protein interfaces.

Pulim V, Berger B, Bienkowska J.

Bioinformatics. 2008 Oct 15;24(20):2324-8. doi: 10.1093/bioinformatics/btn432. Epub 2008 Aug 18.

PMID:
18710876
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Experimental comparison and cross-validation of Affymetrix HT plate and cartridge array gene expression platforms.

Allaire NE, Rieder LE, Bienkowska J, Carulli JP.

Genomics. 2008 Nov;92(5):359-65. doi: 10.1016/j.ygeno.2008.06.010. Epub 2008 Sep 17.

PMID:
18672051
[PubMed - indexed for MEDLINE]
Free Article
11.

Comparative expression analysis of four breast cancer subtypes versus matched normal tissue from the same patients.

Martini PG, Taylor DM, Bienkowska J, Jackson J, McAllister G, Keilhack H, Campbell RK.

J Steroid Biochem Mol Biol. 2008 Apr;109(3-5):207-11. doi: 10.1016/j.jsbmb.2008.03.020. Epub 2008 Mar 14.

PMID:
18424034
[PubMed - indexed for MEDLINE]
12.

LTHREADER: prediction of extracellular ligand-receptor interactions in cytokines using localized threading.

Pulim V, Bienkowska J, Berger B.

Protein Sci. 2008 Feb;17(2):279-92. Epub 2007 Dec 20.

PMID:
18096641
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

LTHREADER: prediction of ligand-receptor interactions using localized threading.

Pulim V, Bienkowska J, Berger B.

Pac Symp Biocomput. 2007:64-75.

PMID:
17992745
[PubMed - indexed for MEDLINE]
Free Article
14.

Estrogen receptors alpha and beta mediate distinct pathways of vascular gene expression, including genes involved in mitochondrial electron transport and generation of reactive oxygen species.

O'Lone R, Knorr K, Jaffe IZ, Schaffer ME, Martini PG, Karas RH, Bienkowska J, Mendelsohn ME, Hansen U.

Mol Endocrinol. 2007 Jun;21(6):1281-96. Epub 2007 Mar 20.

PMID:
17374850
[PubMed - indexed for MEDLINE]
15.

Computational characterization of proteins.

Bienkowska J.

Expert Rev Proteomics. 2005 Jan;2(1):129-38. Review.

PMID:
15966858
[PubMed - indexed for MEDLINE]
16.

Gotrees: predicting go associations from protein domain composition using decision trees.

Hayete B, Bienkowska JR.

Pac Symp Biocomput. 2005:127-38.

PMID:
15759620
[PubMed - indexed for MEDLINE]
17.

A search method for homologs of small proteins. Ubiquitin-like proteins in prokaryotic cells?

Bienkowska JR, Hartman H, Smith TF.

Protein Eng. 2003 Dec;16(12):897-904.

PMID:
14983069
[PubMed - indexed for MEDLINE]
Free Article
18.

Using fold recognition to search for useful proteins: Bayesian approach to fold recognition.

Bienkowska JR.

Brief Bioinform. 2002 Mar;3(1):45-58.

PMID:
12002223
[PubMed - indexed for MEDLINE]
Free Article
19.

Crystal structure of the anthrax lethal factor.

Pannifer AD, Wong TY, Schwarzenbacher R, Renatus M, Petosa C, Bienkowska J, Lacy DB, Collier RJ, Park S, Leppla SH, Hanna P, Liddington RC.

Nature. 2001 Nov 8;414(6860):229-33.

PMID:
11700563
[PubMed - indexed for MEDLINE]
20.

Eliminating superfluous neighbor pairs while threading fold models.

Bieńkowska JR, Rogers RG Jr, Smith TF.

Pac Symp Biocomput. 2000:107-18.

PMID:
10902161
[PubMed - indexed for MEDLINE]

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Loading ...
Write to the Help Desk