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Results: 20

1.

A genome-wide survey reveals a deletion polymorphism associated with resistance to gastrointestinal nematodes in Angus cattle.

Xu L, Hou Y, Bickhart DM, Song J, Van Tassell CP, Sonstegard TS, Liu GE.

Funct Integr Genomics. 2014 Jun;14(2):333-9. doi: 10.1007/s10142-014-0371-6. Epub 2014 Apr 10.

PMID:
24718732
[PubMed - in process]
2.

Short communication: Use of young bulls in the United States.

Hutchison JL, Cole JB, Bickhart DM.

J Dairy Sci. 2014 May;97(5):3213-20. doi: 10.3168/jds.2013-7525. Epub 2014 Mar 5.

PMID:
24612804
[PubMed - in process]
3.

A genome-wide association study of calf birth weight in Holstein cattle using single nucleotide polymorphisms and phenotypes predicted from auxiliary traits.

Cole JB, Waurich B, Wensch-Dorendorf M, Bickhart DM, Swalve HH.

J Dairy Sci. 2014 May;97(5):3156-72. doi: 10.3168/jds.2013-7409. Epub 2014 Mar 5.

PMID:
24612794
[PubMed - in process]
4.

The challenges and importance of structural variation detection in livestock.

Bickhart DM, Liu GE.

Front Genet. 2014 Feb 18;5:37. doi: 10.3389/fgene.2014.00037. eCollection 2014. Review.

PMID:
24600474
[PubMed]
Free PMC Article
5.

Assessing signatures of selection through variation in linkage disequilibrium between taurine and indicine cattle.

Pérez O'Brien AM, Utsunomiya YT, Mészáros G, Bickhart DM, Liu GE, Van Tassell CP, Sonstegard TS, Da Silva MV, Garcia JF, Sölkner J.

Genet Sel Evol. 2014 Mar 4;46:19. doi: 10.1186/1297-9686-46-19.

PMID:
24592996
[PubMed - in process]
Free PMC Article
6.

Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping.

Porto-Neto LR, Sonstegard TS, Liu GE, Bickhart DM, Da Silva MV, Machado MA, Utsunomiya YT, Garcia JF, Gondro C, Van Tassell CP.

BMC Genomics. 2013 Dec 13;14:876. doi: 10.1186/1471-2164-14-876.

PMID:
24330634
[PubMed - in process]
Free PMC Article
7.

Random Forests approach for identifying additive and epistatic single nucleotide polymorphisms associated with residual feed intake in dairy cattle.

Yao C, Spurlock DM, Armentano LE, Page CD Jr, VandeHaar MJ, Bickhart DM, Weigel KA.

J Dairy Sci. 2013 Oct;96(10):6716-29. doi: 10.3168/jds.2012-6237. Epub 2013 Aug 9.

PMID:
23932129
[PubMed - in process]
8.

Butyrate Induced IGF2 Activation Correlated with Distinct Chromatin Signatures Due to Histone Modification.

Shin JH, Li RW, Gao Y, Bickhart DM, Liu GE, Li W, Wu S, Li CJ.

Gene Regul Syst Bio. 2013 Mar 26;7:57-70. doi: 10.4137/GRSB.S11243. Print 2013.

PMID:
23645985
[PubMed]
Free PMC Article
9.

Identification of candidate transcription factor binding sites in the cattle genome.

Bickhart DM, Liu GE.

Genomics Proteomics Bioinformatics. 2013 Jun;11(3):195-8. doi: 10.1016/j.gpb.2012.10.004. Epub 2013 Feb 1.

PMID:
23433959
[PubMed - indexed for MEDLINE]
Free Article
10.

Analysis of copy number variations in Holstein cows identify potential mechanisms contributing to differences in residual feed intake.

Hou Y, Bickhart DM, Chung H, Hutchison JL, Norman HD, Connor EE, Liu GE.

Funct Integr Genomics. 2012 Nov;12(4):717-23. doi: 10.1007/s10142-012-0295-y. Epub 2012 Sep 19.

PMID:
22991089
[PubMed - indexed for MEDLINE]
11.

Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array.

Hou Y, Bickhart DM, Hvinden ML, Li C, Song J, Boichard DA, Fritz S, Eggen A, DeNise S, Wiggans GR, Sonstegard TS, Van Tassell CP, Liu GE.

BMC Genomics. 2012 Aug 6;13:376. doi: 10.1186/1471-2164-13-376.

PMID:
22866901
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Copy number variation in the cattle genome.

Liu GE, Bickhart DM.

Funct Integr Genomics. 2012 Nov;12(4):609-24. doi: 10.1007/s10142-012-0289-9. Epub 2012 Jul 13. Review.

PMID:
22790923
[PubMed - indexed for MEDLINE]
13.

Copy number variation of individual cattle genomes using next-generation sequencing.

Bickhart DM, Hou Y, Schroeder SG, Alkan C, Cardone MF, Matukumalli LK, Song J, Schnabel RD, Ventura M, Taylor JF, Garcia JF, Van Tassell CP, Sonstegard TS, Eichler EE, Liu GE.

Genome Res. 2012 Apr;22(4):778-90. doi: 10.1101/gr.133967.111. Epub 2012 Feb 2.

PMID:
22300768
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Genomic regions showing copy number variations associate with resistance or susceptibility to gastrointestinal nematodes in Angus cattle.

Hou Y, Liu GE, Bickhart DM, Matukumalli LK, Li C, Song J, Gasbarre LC, Van Tassell CP, Sonstegard TS.

Funct Integr Genomics. 2012 Mar;12(1):81-92. doi: 10.1007/s10142-011-0252-1. Epub 2011 Sep 18.

PMID:
21928070
[PubMed - indexed for MEDLINE]
15.

Transcriptomes of Frankia sp. strain CcI3 in growth transitions.

Bickhart DM, Benson DR.

BMC Microbiol. 2011 Aug 25;11:192. doi: 10.1186/1471-2180-11-192.

PMID:
21867524
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The biology of Frankia sp. strains in the post-genome era.

Benson DR, Brooks JM, Huang Y, Bickhart DM, Mastronunzio JE.

Mol Plant Microbe Interact. 2011 Nov;24(11):1310-6. doi: 10.1094/MPMI-06-11-0150. Review.

PMID:
21848398
[PubMed - indexed for MEDLINE]
Free Article
17.

Genomic characteristics of cattle copy number variations.

Hou Y, Liu GE, Bickhart DM, Cardone MF, Wang K, Kim ES, Matukumalli LK, Ventura M, Song J, VanRaden PM, Sonstegard TS, Van Tassell CP.

BMC Genomics. 2011 Feb 23;12:127. doi: 10.1186/1471-2164-12-127.

PMID:
21345189
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Insertion sequence content reflects genome plasticity in strains of the root nodule actinobacterium Frankia.

Bickhart DM, Gogarten JP, Lapierre P, Tisa LS, Normand P, Benson DR.

BMC Genomics. 2009 Oct 12;10:468. doi: 10.1186/1471-2164-10-468.

PMID:
19821988
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales.

Zhaxybayeva O, Swithers KS, Lapierre P, Fournier GP, Bickhart DM, DeBoy RT, Nelson KE, Nesbø CL, Doolittle WF, Gogarten JP, Noll KM.

Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5865-70. doi: 10.1073/pnas.0901260106. Epub 2009 Mar 23.

PMID:
19307556
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography.

Normand P, Lapierre P, Tisa LS, Gogarten JP, Alloisio N, Bagnarol E, Bassi CA, Berry AM, Bickhart DM, Choisne N, Couloux A, Cournoyer B, Cruveiller S, Daubin V, Demange N, Francino MP, Goltsman E, Huang Y, Kopp OR, Labarre L, Lapidus A, Lavire C, Marechal J, Martinez M, Mastronunzio JE, Mullin BC, Niemann J, Pujic P, Rawnsley T, Rouy Z, Schenowitz C, Sellstedt A, Tavares F, Tomkins JP, Vallenet D, Valverde C, Wall LG, Wang Y, Medigue C, Benson DR.

Genome Res. 2007 Jan;17(1):7-15. Epub 2006 Dec 6.

PMID:
17151343
[PubMed - indexed for MEDLINE]
Free PMC Article

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