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Results: 9

1.

Computational strategies for a system-level understanding of metabolism.

Cazzaniga P, Damiani C, Besozzi D, Colombo R, Nobile MS, Gaglio D, Pescini D, Molinari S, Mauri G, Alberghina L, Vanoni M.

Metabolites. 2014 Nov 24;4(4):1034-87. doi: 10.3390/metabo4041034. Review.

2.

Massive exploration of perturbed conditions of the blood coagulation cascade through GPU parallelization.

Cazzaniga P, Nobile MS, Besozzi D, Bellini M, Mauri G.

Biomed Res Int. 2014;2014:863298. doi: 10.1155/2014/863298. Epub 2014 Jun 16.

3.

cuTauLeaping: a GPU-powered tau-leaping stochastic simulator for massive parallel analyses of biological systems.

Nobile MS, Cazzaniga P, Besozzi D, Pescini D, Mauri G.

PLoS One. 2014 Mar 24;9(3):e91963. doi: 10.1371/journal.pone.0091963. eCollection 2014.

4.

In vivo and in silico analysis of PCNA ubiquitylation in the activation of the Post Replication Repair pathway in S. cerevisiae.

Amara F, Colombo R, Cazzaniga P, Pescini D, Csikász-Nagy A, Falconi MM, Besozzi D, Plevani P.

BMC Syst Biol. 2013 Mar 20;7:24. doi: 10.1186/1752-0509-7-24.

5.

The role of feedback control mechanisms on the establishment of oscillatory regimes in the Ras/cAMP/PKA pathway in S. cerevisiae.

Besozzi D, Cazzaniga P, Pescini D, Mauri G, Colombo S, Martegani E.

EURASIP J Bioinform Syst Biol. 2012 Jul 20;2012(1):10. doi: 10.1186/1687-4153-2012-10.

6.

Simulation of the Ras/cAMP/PKA pathway in budding yeast highlights the establishment of stable oscillatory states.

Pescini D, Cazzaniga P, Besozzi D, Mauri G, Amigoni L, Colombo S, Martegani E.

Biotechnol Adv. 2012 Jan-Feb;30(1):99-107. doi: 10.1016/j.biotechadv.2011.06.014. Epub 2011 Jun 29.

PMID:
21741466
7.

Modeling and stochastic simulation of the Ras/cAMP/PKA pathway in the yeast Saccharomyces cerevisiae evidences a key regulatory function for intracellular guanine nucleotides pools.

Cazzaniga P, Pescini D, Besozzi D, Mauri G, Colombo S, Martegani E.

J Biotechnol. 2008 Feb 1;133(3):377-85. Epub 2007 Oct 11.

PMID:
18023904
8.

Modelling metapopulations with stochastic membrane systems.

Besozzi D, Cazzaniga P, Pescini D, Mauri G.

Biosystems. 2008 Mar;91(3):499-514. Epub 2007 Aug 11. Review.

PMID:
17904729
9.

P systems with deadlock.

Besozzi D, Ferretti C, Mauri G, Zandron C.

Biosystems. 2003 Jul;70(2):95-105.

PMID:
12915268
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