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Results: 1 to 20 of 205

1.

Hierarchical Boosting: a machine-learning framework to detect and classify hard selective sweeps in human populations.

Pybus M, Luisi P, Dall'Olio G, Uzkundun M, Laayouni H, Bertranpetit J, Engelken J.

Bioinformatics. 2015 Aug 26. pii: btv493. [Epub ahead of print]

PMID:
26315912
2.

The genetics of East African populations: a Nilo-Saharan component in the African genetic landscape.

Dobon B, Hassan HY, Laayouni H, Luisi P, Ricaño-Ponce I, Zhernakova A, Wijmenga C, Tahir H, Comas D, Netea MG, Bertranpetit J.

Sci Rep. 2015 May 28;5:9996. doi: 10.1038/srep09996.

3.

Recent positive selection has acted on genes encoding proteins with more interactions within the whole human interactome.

Luisi P, Alvarez-Ponce D, Pybus M, Fares MA, Bertranpetit J, Laayouni H.

Genome Biol Evol. 2015 Apr 2;7(4):1141-54. doi: 10.1093/gbe/evv055.

4.

Y-chromosome diversity in Catalan surname samples: insights into surname origin and frequency.

Solé-Morata N, Bertranpetit J, Comas D, Calafell F.

Eur J Hum Genet. 2015 Feb 18. doi: 10.1038/ejhg.2015.14. [Epub ahead of print]

PMID:
25689924
5.

Identification of risk loci for Crohn's disease phenotypes using a genome-wide association study.

Alonso A, Domènech E, Julià A, Panés J, García-Sánchez V, Mateu PN, Gutiérrez A, Gomollón F, Mendoza JL, Garcia-Planella E, Barreiro-de Acosta M, Muñoz F, Vera M, Saro C, Esteve M, Andreu M, Chaparro M, Manyé J, Cabré E, López-Lasanta M, Tortosa R, Gelpí JL, García-Montero AC, Bertranpetit J, Absher D, Myers RM, Marsal S, Gisbert JP.

Gastroenterology. 2015 Apr;148(4):794-805. doi: 10.1053/j.gastro.2014.12.030. Epub 2014 Dec 31.

PMID:
25557950
6.

An integrative evolution theory of histo-blood group ABO and related genes.

Yamamoto F, Cid E, Yamamoto M, Saitou N, Bertranpetit J, Blancher A.

Sci Rep. 2014 Oct 13;4:6601. doi: 10.1038/srep06601.

7.

VCF2Networks: applying genotype networks to single-nucleotide variants data.

Dall'Olio GM, Vahdati AR, Bertranpetit J, Wagner A, Laayouni H.

Bioinformatics. 2015 Feb 1;31(3):438-9. doi: 10.1093/bioinformatics/btu650. Epub 2014 Oct 4.

PMID:
25282646
8.

A genome-wide association study identifies a novel locus at 6q22.1 associated with ulcerative colitis.

Julià A, Domènech E, Chaparro M, García-Sánchez V, Gomollón F, Panés J, Mañosa M, Barreiro-De Acosta M, Gutiérrez A, Garcia-Planella E, Aguas M, Muñoz F, Esteve M, Mendoza JL, Vera M, Márquez L, Tortosa R, López-Lasanta M, Alonso A, Gelpí JL, García-Montero AC, Bertranpetit J, Absher D, Myers RM, Gisbert JP, Marsal S.

Hum Mol Genet. 2014 Dec 20;23(25):6927-34. doi: 10.1093/hmg/ddu398. Epub 2014 Jul 31.

PMID:
25082827
9.

Population and genomic lessons from genetic analysis of two Indian populations.

Juyal G, Mondal M, Luisi P, Laayouni H, Sood A, Midha V, Heutink P, Bertranpetit J, Thelma BK, Casals F.

Hum Genet. 2014 Oct;133(10):1273-87. doi: 10.1007/s00439-014-1462-0. Epub 2014 Jul 1.

PMID:
24980708
10.

Human genome variation and the concept of genotype networks.

Dall'Olio GM, Bertranpetit J, Wagner A, Laayouni H.

PLoS One. 2014 Jun 9;9(6):e99424. doi: 10.1371/journal.pone.0099424. eCollection 2014. Erratum in: PLoS One. 2014;9(8):e107347.

11.

Recent radiation of R-M269 and high Y-STR haplotype resemblance confirmed.

Solé-Morata N, Bertranpetit J, Comas D, Calafell F.

Ann Hum Genet. 2014 Jul;78(4):253-4. doi: 10.1111/ahg.12066. Epub 2014 May 13. No abstract available.

PMID:
24820547
12.

A comprehensive model of the phototransduction cascade in mouse rod cells.

Invergo BM, Dell'Orco D, Montanucci L, Koch KW, Bertranpetit J.

Mol Biosyst. 2014 Jun;10(6):1481-9. doi: 10.1039/c3mb70584f. Epub 2014 Mar 28.

PMID:
24675755
13.

Convergent evolution in European and Rroma populations reveals pressure exerted by plague on Toll-like receptors.

Laayouni H, Oosting M, Luisi P, Ioana M, Alonso S, Ricaño-Ponce I, Trynka G, Zhernakova A, Plantinga TS, Cheng SC, van der Meer JW, Popp R, Sood A, Thelma BK, Wijmenga C, Joosten LA, Bertranpetit J, Netea MG.

Proc Natl Acad Sci U S A. 2014 Feb 18;111(7):2668-73. doi: 10.1073/pnas.1317723111. Epub 2014 Feb 3.

14.

1000 Genomes Selection Browser 1.0: a genome browser dedicated to signatures of natural selection in modern humans.

Pybus M, Dall'Olio GM, Luisi P, Uzkudun M, Carreño-Torres A, Pavlidis P, Laayouni H, Bertranpetit J, Engelken J.

Nucleic Acids Res. 2014 Jan;42(Database issue):D903-9. doi: 10.1093/nar/gkt1188. Epub 2013 Nov 25.

15.

Metabolic flux is a determinant of the evolutionary rates of enzyme-encoding genes.

Colombo M, Laayouni H, Invergo BM, Bertranpetit J, Montanucci L.

Evolution. 2014 Feb;68(2):605-13. doi: 10.1111/evo.12262. Epub 2013 Sep 19.

PMID:
24102646
16.

Great ape genetic diversity and population history.

Prado-Martinez J, Sudmant PH, Kidd JM, Li H, Kelley JL, Lorente-Galdos B, Veeramah KR, Woerner AE, O'Connor TD, Santpere G, Cagan A, Theunert C, Casals F, Laayouni H, Munch K, Hobolth A, Halager AE, Malig M, Hernandez-Rodriguez J, Hernando-Herraez I, Prüfer K, Pybus M, Johnstone L, Lachmann M, Alkan C, Twigg D, Petit N, Baker C, Hormozdiari F, Fernandez-Callejo M, Dabad M, Wilson ML, Stevison L, Camprubí C, Carvalho T, Ruiz-Herrera A, Vives L, Mele M, Abello T, Kondova I, Bontrop RE, Pusey A, Lankester F, Kiyang JA, Bergl RA, Lonsdorf E, Myers S, Ventura M, Gagneux P, Comas D, Siegismund H, Blanc J, Agueda-Calpena L, Gut M, Fulton L, Tishkoff SA, Mullikin JC, Wilson RK, Gut IG, Gonder MK, Ryder OA, Hahn BH, Navarro A, Akey JM, Bertranpetit J, Reich D, Mailund T, Schierup MH, Hvilsom C, Andrés AM, Wall JD, Bustamante CD, Hammer MF, Eichler EE, Marques-Bonet T.

Nature. 2013 Jul 25;499(7459):471-5. doi: 10.1038/nature12228. Epub 2013 Jul 3.

17.

Gene flow from North Africa contributes to differential human genetic diversity in southern Europe.

Botigué LR, Henn BM, Gravel S, Maples BK, Gignoux CR, Corona E, Atzmon G, Burns E, Ostrer H, Flores C, Bertranpetit J, Comas D, Bustamante CD.

Proc Natl Acad Sci U S A. 2013 Jul 16;110(29):11791-6. doi: 10.1073/pnas.1306223110. Epub 2013 Jun 3.

18.

The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild.

Prado-Martinez J, Hernando-Herraez I, Lorente-Galdos B, Dabad M, Ramirez O, Baeza-Delgado C, Morcillo-Suarez C, Alkan C, Hormozdiari F, Raineri E, Estellé J, Fernandez-Callejo M, Valles M, Ritscher L, Schöneberg T, de la Calle-Mustienes E, Casillas S, Rubio-Acero R, Melé M, Engelken J, Caceres M, Gomez-Skarmeta JL, Gut M, Bertranpetit J, Gut IG, Abello T, Eichler EE, Mingarro I, Lalueza-Fox C, Navarro A, Marques-Bonet T.

BMC Genomics. 2013 May 31;14:363. doi: 10.1186/1471-2164-14-363.

19.

Exploring the rate-limiting steps in visual phototransduction recovery by bottom-up kinetic modeling.

Invergo BM, Montanucci L, Koch KW, Bertranpetit J, Dell'orco D.

Cell Commun Signal. 2013 May 21;11(1):36. doi: 10.1186/1478-811X-11-36.

20.

Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans.

Brotherton P, Haak W, Templeton J, Brandt G, Soubrier J, Jane Adler C, Richards SM, Sarkissian CD, Ganslmeier R, Friederich S, Dresely V, van Oven M, Kenyon R, Van der Hoek MB, Korlach J, Luong K, Ho SY, Quintana-Murci L, Behar DM, Meller H, Alt KW, Cooper A; Genographic Consortium, Adhikarla S, Ganesh Prasad AK, Pitchappan R, Varatharajan Santhakumari A, Balanovska E, Balanovsky O, Bertranpetit J, Comas D, Martínez-Cruz B, Melé M, Clarke AC, Matisoo-Smith EA, Dulik MC, Gaieski JB, Owings AC, Schurr TG, Vilar MG, Hobbs A, Soodyall H, Javed A, Parida L, Platt DE, Royyuru AK, Jin L, Li S, Kaplan ME, Merchant NC, John Mitchell R, Renfrew C, Lacerda DR, Santos FR, Soria Hernanz DF, Spencer Wells R, Swamikrishnan P, Tyler-Smith C, Paulo Vieira P, Ziegle JS.

Nat Commun. 2013;4:1764. doi: 10.1038/ncomms2656.

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