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Results: 1 to 20 of 150

1.

Medicine. Halting harmful helminths.

Hoffmann KF, Brindley PJ, Berriman M.

Science. 2014 Oct 10;346(6206):168-9. doi: 10.1126/science.1261139. No abstract available.

PMID:
25301604
[PubMed - in process]
2.

TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei.

Shameer S, Logan-Klumpler FJ, Vinson F, Cottret L, Merlet B, Achcar F, Boshart M, Berriman M, Breitling R, Bringaud F, Bütikofer P, Cattanach AM, Bannerman-Chukualim B, Creek DJ, Crouch K, de Koning HP, Denise H, Ebikeme C, Fairlamb AH, Ferguson MA, Ginger ML, Hertz-Fowler C, Kerkhoven EJ, Mäser P, Michels PA, Nayak A, Nes DW, Nolan DP, Olsen C, Silva-Franco F, Smith TK, Taylor MC, Tielens AG, Urbaniak MD, van Hellemond JJ, Vincent IM, Wilkinson SR, Wyllie S, Opperdoes FR, Barrett MP, Jourdan F.

Nucleic Acids Res. 2014 Oct 9. pii: gku944. [Epub ahead of print]

PMID:
25300491
[PubMed - as supplied by publisher]
Free Article
3.

Optimized Whole-Genome Amplification Strategy for Extremely AT-Biased Template.

Oyola SO, Manske M, Campino S, Claessens A, Hamilton WL, Kekre M, Drury E, Mead D, Gu Y, Miles A, MacInnis B, Newbold C, Berriman M, Kwiatkowski DP.

DNA Res. 2014 Sep 19. pii: dsu028. [Epub ahead of print]

PMID:
25240466
[PubMed - as supplied by publisher]
4.

Genome sequencing of chimpanzee malaria parasites reveals possible pathways of adaptation to human hosts.

Otto TD, Rayner JC, Böhme U, Pain A, Spottiswoode N, Sanders M, Quail M, Ollomo B, Renaud F, Thomas AW, Prugnolle F, Conway DJ, Newbold C, Berriman M.

Nat Commun. 2014 Sep 9;5:4754. doi: 10.1038/ncomms5754.

PMID:
25203297
[PubMed - in process]
Free PMC Article
5.

International glossina genome initiative 2004-2014: a driver for post-genomic era research on the African continent.

Christoffels A, Masiga D, Berriman M, Lehane M, Touré Y, Aksoy S.

PLoS Negl Trop Dis. 2014 Aug 21;8(8):e3024. doi: 10.1371/journal.pntd.0003024. eCollection 2014 Aug. No abstract available.

PMID:
25144472
[PubMed - in process]
Free PMC Article
6.

Genomic analysis of the causative agents of coccidiosis in domestic chickens.

Reid AJ, Blake DP, Ansari HR, Billington K, Browne HP, Bryant J, Dunn M, Hung SS, Kawahara F, Miranda-Saavedra D, Malas TB, Mourier T, Naghra H, Nair M, Otto TD, Rawlings ND, Rivailler P, Sanchez-Flores A, Sanders M, Subramaniam C, Tay YL, Woo Y, Wu X, Barrell B, Dear PH, Doerig C, Gruber A, Ivens AC, Parkinson J, Rajandream MA, Shirley MW, Wan KL, Berriman M, Tomley FM, Pain A.

Genome Res. 2014 Oct;24(10):1676-85. doi: 10.1101/gr.168955.113. Epub 2014 Jul 11.

PMID:
25015382
[PubMed - in process]
Free PMC Article
7.

Secreted Proteomes of Different Developmental Stages of the Gastrointestinal Nematode Nippostrongylus brasiliensis.

Sotillo J, Sanchez-Flores A, Cantacessi C, Harcus Y, Pickering D, Bouchery T, Camberis M, Tang SC, Giacomin P, Mulvenna J, Mitreva M, Berriman M, LeGros G, Maizels RM, Loukas A.

Mol Cell Proteomics. 2014 Oct;13(10):2736-51. doi: 10.1074/mcp.M114.038950. Epub 2014 Jul 3.

PMID:
24994561
[PubMed - in process]
8.

Whipworm genome and dual-species transcriptome analyses provide molecular insights into an intimate host-parasite interaction.

Foth BJ, Tsai IJ, Reid AJ, Bancroft AJ, Nichol S, Tracey A, Holroyd N, Cotton JA, Stanley EJ, Zarowiecki M, Liu JZ, Huckvale T, Cooper PJ, Grencis RK, Berriman M.

Nat Genet. 2014 Jul;46(7):693-700. doi: 10.1038/ng.3010. Epub 2014 Jun 15.

PMID:
24929830
[PubMed - indexed for MEDLINE]
9.

The evolutionary dynamics of variant antigen genes in Babesia reveal a history of genomic innovation underlying host-parasite interaction.

Jackson AP, Otto TD, Darby A, Ramaprasad A, Xia D, Echaide IE, Farber M, Gahlot S, Gamble J, Gupta D, Gupta Y, Jackson L, Malandrin L, Malas TB, Moussa E, Nair M, Reid AJ, Sanders M, Sharma J, Tracey A, Quail MA, Weir W, Wastling JM, Hall N, Willadsen P, Lingelbach K, Shiels B, Tait A, Berriman M, Allred DR, Pain A.

Nucleic Acids Res. 2014;42(11):7113-31. doi: 10.1093/nar/gku322. Epub 2014 May 5.

PMID:
24799432
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Human African trypanosomiasis research gets a boost: unraveling the tsetse genome.

Aksoy S, Attardo G, Berriman M, Christoffels A, Lehane M, Masiga D, Toure Y.

PLoS Negl Trop Dis. 2014 Apr 24;8(4):e2624. doi: 10.1371/journal.pntd.0002624. eCollection 2014 Apr. No abstract available.

PMID:
24762859
[PubMed - in process]
Free PMC Article
11.

Phosphoinositide metabolism links cGMP-dependent protein kinase G to essential Ca²⁺ signals at key decision points in the life cycle of malaria parasites.

Brochet M, Collins MO, Smith TK, Thompson E, Sebastian S, Volkmann K, Schwach F, Chappell L, Gomes AR, Berriman M, Rayner JC, Baker DA, Choudhary J, Billker O.

PLoS Biol. 2014 Mar 4;12(3):e1001806. doi: 10.1371/journal.pbio.1001806. eCollection 2014 Mar.

PMID:
24594931
[PubMed - in process]
Free PMC Article
12.

A comprehensive evaluation of assembly scaffolding tools.

Hunt M, Newbold C, Berriman M, Otto TD.

Genome Biol. 2014 Mar 3;15(3):R42. doi: 10.1186/gb-2014-15-3-r42.

PMID:
24581555
[PubMed - in process]
Free PMC Article
13.

The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode.

Cotton JA, Lilley CJ, Jones LM, Kikuchi T, Reid AJ, Thorpe P, Tsai IJ, Beasley H, Blok V, Cock PJ, Eves-van den Akker S, Holroyd N, Hunt M, Mantelin S, Naghra H, Pain A, Palomares-Rius JE, Zarowiecki M, Berriman M, Jones JT, Urwin PE.

Genome Biol. 2014 Mar 3;15(3):R43. doi: 10.1186/gb-2014-15-3-r43.

PMID:
24580726
[PubMed - in process]
Free PMC Article
14.

A cascade of DNA-binding proteins for sexual commitment and development in Plasmodium.

Sinha A, Hughes KR, Modrzynska KK, Otto TD, Pfander C, Dickens NJ, Religa AA, Bushell E, Graham AL, Cameron R, Kafsack BF, Williams AE, Llinás M, Berriman M, Billker O, Waters AP.

Nature. 2014 Mar 13;507(7491):253-7. doi: 10.1038/nature12970. Epub 2014 Feb 23.

PMID:
24572359
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Genomic confirmation of hybridisation and recent inbreeding in a vector-isolated Leishmania population.

Rogers MB, Downing T, Smith BA, Imamura H, Sanders M, Svobodova M, Volf P, Berriman M, Cotton JA, Smith DF.

PLoS Genet. 2014 Jan;10(1):e1004092. doi: 10.1371/journal.pgen.1004092. Epub 2014 Jan 16.

PMID:
24453988
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Summarizing specific profiles in Illumina sequencing from whole-genome amplified DNA.

Tsai IJ, Hunt M, Holroyd N, Huckvale T, Berriman M, Kikuchi T.

DNA Res. 2014 Jun;21(3):243-54. doi: 10.1093/dnares/dst054. Epub 2013 Dec 18.

PMID:
24353264
[PubMed - in process]
Free PMC Article
17.

Genetic and molecular basis of drug resistance and species-specific drug action in schistosome parasites.

Valentim CL, Cioli D, Chevalier FD, Cao X, Taylor AB, Holloway SP, Pica-Mattoccia L, Guidi A, Basso A, Tsai IJ, Berriman M, Carvalho-Queiroz C, Almeida M, Aguilar H, Frantz DE, Hart PJ, LoVerde PT, Anderson TJ.

Science. 2013 Dec 13;342(6164):1385-9. doi: 10.1126/science.1243106. Epub 2013 Nov 21.

PMID:
24263136
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

WormBase 2014: new views of curated biology.

Harris TW, Baran J, Bieri T, Cabunoc A, Chan J, Chen WJ, Davis P, Done J, Grove C, Howe K, Kishore R, Lee R, Li Y, Muller HM, Nakamura C, Ozersky P, Paulini M, Raciti D, Schindelman G, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Wong JD, Yook K, Schedl T, Hodgkin J, Berriman M, Kersey P, Spieth J, Stein L, Sternberg PW.

Nucleic Acids Res. 2014 Jan;42(Database issue):D789-93. doi: 10.1093/nar/gkt1063. Epub 2013 Nov 4.

PMID:
24194605
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery.

Laing R, Kikuchi T, Martinelli A, Tsai IJ, Beech RN, Redman E, Holroyd N, Bartley DJ, Beasley H, Britton C, Curran D, Devaney E, Gilabert A, Hunt M, Jackson F, Johnston SL, Kryukov I, Li K, Morrison AA, Reid AJ, Sargison N, Saunders GI, Wasmuth JD, Wolstenholme A, Berriman M, Gilleard JS, Cotton JA.

Genome Biol. 2013 Aug 28;14(8):R88. doi: 10.1186/gb-2013-14-8-r88.

PMID:
23985316
[PubMed - in process]
Free PMC Article
20.

Genome-wide profiling of chromosome interactions in Plasmodium falciparum characterizes nuclear architecture and reconfigurations associated with antigenic variation.

Lemieux JE, Kyes SA, Otto TD, Feller AI, Eastman RT, Pinches RA, Berriman M, Su XZ, Newbold CI.

Mol Microbiol. 2013 Nov;90(3):519-37. doi: 10.1111/mmi.12381. Epub 2013 Sep 30.

PMID:
23980881
[PubMed - in process]
Free PMC Article

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