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Results: 1 to 20 of 145

1.

Genomic analysis of the causative agents of coccidiosis in domestic chickens.

Reid AJ, Blake DP, Ansari HR, Billington K, Browne HP, Bryant JM, Dunn M, Hung SS, Kawahara F, Miranda-Saavedra D, Malas T, Mourier T, Naghra H, Nair M, Otto TD, Rawlings ND, Rivailler P, Sanchez-Flores A, Sanders M, Subramaniam C, Tay YL, Woo Y, Wu X, Barrell B, Dear PH, Doerig C, Gruber A, Ivens AC, Parkinson J, Rajandream MA, Shirley MW, Wan KL, Berriman M, Tomley FM, Pain A.

Genome Res. 2014 Jul 11. pii: gr.168955.113. [Epub ahead of print]

PMID:
25015382
[PubMed - as supplied by publisher]
Free Article
2.

Secreted proteomes of different developmental stages of the gastrointestinal nematode Nippostrongylus brasiliensis.

Sotillo J, Sanchez-Flores A, Cantacessi C, Harcus Y, Pickering D, Bouchery T, Camberis M, Tang SC, Giacomin P, Mulvenna J, Mitreva M, Berriman M, LeGros G, Maizels RM, Loukas A.

Mol Cell Proteomics. 2014 Jul 3. pii: mcp.M114.038950. [Epub ahead of print]

PMID:
24994561
[PubMed - as supplied by publisher]
Free Article
3.

Whipworm genome and dual-species transcriptome analyses provide molecular insights into an intimate host-parasite interaction.

Foth BJ, Tsai IJ, Reid AJ, Bancroft AJ, Nichol S, Tracey A, Holroyd N, Cotton JA, Stanley EJ, Zarowiecki M, Liu JZ, Huckvale T, Cooper PJ, Grencis RK, Berriman M.

Nat Genet. 2014 Jul;46(7):693-700. doi: 10.1038/ng.3010. Epub 2014 Jun 15.

PMID:
24929830
[PubMed - in process]
4.

The evolutionary dynamics of variant antigen genes in Babesia reveal a history of genomic innovation underlying host-parasite interaction.

Jackson AP, Otto TD, Darby A, Ramaprasad A, Xia D, Echaide IE, Farber M, Gahlot S, Gamble J, Gupta D, Gupta Y, Jackson L, Malandrin L, Malas TB, Moussa E, Nair M, Reid AJ, Sanders M, Sharma J, Tracey A, Quail MA, Weir W, Wastling JM, Hall N, Willadsen P, Lingelbach K, Shiels B, Tait A, Berriman M, Allred DR, Pain A.

Nucleic Acids Res. 2014;42(11):7113-31. doi: 10.1093/nar/gku322. Epub 2014 May 5.

PMID:
24799432
[PubMed - in process]
Free PMC Article
5.

Human African trypanosomiasis research gets a boost: unraveling the tsetse genome.

Aksoy S, Attardo G, Berriman M, Christoffels A, Lehane M, Masiga D, Toure Y.

PLoS Negl Trop Dis. 2014 Apr 24;8(4):e2624. doi: 10.1371/journal.pntd.0002624. eCollection 2014 Apr. No abstract available.

PMID:
24762859
[PubMed - in process]
Free PMC Article
6.

Phosphoinositide metabolism links cGMP-dependent protein kinase G to essential Ca²⁺ signals at key decision points in the life cycle of malaria parasites.

Brochet M, Collins MO, Smith TK, Thompson E, Sebastian S, Volkmann K, Schwach F, Chappell L, Gomes AR, Berriman M, Rayner JC, Baker DA, Choudhary J, Billker O.

PLoS Biol. 2014 Mar 4;12(3):e1001806. doi: 10.1371/journal.pbio.1001806. eCollection 2014 Mar.

PMID:
24594931
[PubMed - in process]
Free PMC Article
7.

A comprehensive evaluation of assembly scaffolding tools.

Hunt M, Newbold C, Berriman M, Otto TD.

Genome Biol. 2014 Mar 3;15(3):R42. [Epub ahead of print]

PMID:
24581555
[PubMed - as supplied by publisher]
Free PMC Article
8.

The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode.

Cotton JA, Lilley CJ, Jones LM, Kikuchi T, Reid AJ, Thorpe P, Tsai IJ, Beasley H, Blok V, Cock PJ, Eves-van den Akker S, Holroyd N, Hunt M, Mantelin S, Naghra H, Pain A, Palomares-Rius JE, Zarowiecki M, Berriman M, Jones JT, Urwin PE.

Genome Biol. 2014 Mar 3;15(3):R43. [Epub ahead of print]

PMID:
24580726
[PubMed - as supplied by publisher]
Free PMC Article
9.

A cascade of DNA-binding proteins for sexual commitment and development in Plasmodium.

Sinha A, Hughes KR, Modrzynska KK, Otto TD, Pfander C, Dickens NJ, Religa AA, Bushell E, Graham AL, Cameron R, Kafsack BF, Williams AE, Llinás M, Berriman M, Billker O, Waters AP.

Nature. 2014 Mar 13;507(7491):253-7. doi: 10.1038/nature12970. Epub 2014 Feb 23.

PMID:
24572359
[PubMed - indexed for MEDLINE]
10.

Genomic confirmation of hybridisation and recent inbreeding in a vector-isolated Leishmania population.

Rogers MB, Downing T, Smith BA, Imamura H, Sanders M, Svobodova M, Volf P, Berriman M, Cotton JA, Smith DF.

PLoS Genet. 2014 Jan;10(1):e1004092. doi: 10.1371/journal.pgen.1004092. Epub 2014 Jan 16.

PMID:
24453988
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Summarizing specific profiles in Illumina sequencing from whole-genome amplified DNA.

Tsai IJ, Hunt M, Holroyd N, Huckvale T, Berriman M, Kikuchi T.

DNA Res. 2014 Jun;21(3):243-54. doi: 10.1093/dnares/dst054. Epub 2013 Dec 18.

PMID:
24353264
[PubMed - in process]
Free PMC Article
12.

Genetic and molecular basis of drug resistance and species-specific drug action in schistosome parasites.

Valentim CL, Cioli D, Chevalier FD, Cao X, Taylor AB, Holloway SP, Pica-Mattoccia L, Guidi A, Basso A, Tsai IJ, Berriman M, Carvalho-Queiroz C, Almeida M, Aguilar H, Frantz DE, Hart PJ, LoVerde PT, Anderson TJ.

Science. 2013 Dec 13;342(6164):1385-9. doi: 10.1126/science.1243106. Epub 2013 Nov 21.

PMID:
24263136
[PubMed - indexed for MEDLINE]
13.

WormBase 2014: new views of curated biology.

Harris TW, Baran J, Bieri T, Cabunoc A, Chan J, Chen WJ, Davis P, Done J, Grove C, Howe K, Kishore R, Lee R, Li Y, Muller HM, Nakamura C, Ozersky P, Paulini M, Raciti D, Schindelman G, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Wong JD, Yook K, Schedl T, Hodgkin J, Berriman M, Kersey P, Spieth J, Stein L, Sternberg PW.

Nucleic Acids Res. 2014 Jan;42(Database issue):D789-93. doi: 10.1093/nar/gkt1063. Epub 2013 Nov 4.

PMID:
24194605
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery.

Laing R, Kikuchi T, Martinelli A, Tsai IJ, Beech RN, Redman E, Holroyd N, Bartley DJ, Beasley H, Britton C, Curran D, Devaney E, Gilabert A, Hunt M, Jackson F, Johnston SL, Kryukov I, Li K, Morrison AA, Reid AJ, Sargison N, Saunders GI, Wasmuth JD, Wolstenholme A, Berriman M, Gilleard JS, Cotton JA.

Genome Biol. 2013 Aug 28;14(8):R88. doi: 10.1186/gb-2013-14-8-r88.

PMID:
23985316
[PubMed - in process]
Free PMC Article
15.

Genome-wide profiling of chromosome interactions in Plasmodium falciparum characterizes nuclear architecture and reconfigurations associated with antigenic variation.

Lemieux JE, Kyes SA, Otto TD, Feller AI, Eastman RT, Pinches RA, Berriman M, Su XZ, Newbold CI.

Mol Microbiol. 2013 Nov;90(3):519-37. doi: 10.1111/mmi.12381. Epub 2013 Sep 30.

PMID:
23980881
[PubMed - in process]
Free PMC Article
16.

Vector transmission regulates immune control of Plasmodium virulence.

Spence PJ, Jarra W, Lévy P, Reid AJ, Chappell L, Brugat T, Sanders M, Berriman M, Langhorne J.

Nature. 2013 Jun 13;498(7453):228-31. doi: 10.1038/nature12231. Epub 2013 May 29.

PMID:
23719378
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

REAPR: a universal tool for genome assembly evaluation.

Hunt M, Kikuchi T, Sanders M, Newbold C, Berriman M, Otto TD.

Genome Biol. 2013 May 27;14(5):R47. doi: 10.1186/gb-2013-14-5-r47.

PMID:
23710727
[PubMed - in process]
Free PMC Article
18.

Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia.

Miotto O, Almagro-Garcia J, Manske M, Macinnis B, Campino S, Rockett KA, Amaratunga C, Lim P, Suon S, Sreng S, Anderson JM, Duong S, Nguon C, Chuor CM, Saunders D, Se Y, Lon C, Fukuda MM, Amenga-Etego L, Hodgson AV, Asoala V, Imwong M, Takala-Harrison S, Nosten F, Su XZ, Ringwald P, Ariey F, Dolecek C, Hien TT, Boni MF, Thai CQ, Amambua-Ngwa A, Conway DJ, Djimdé AA, Doumbo OK, Zongo I, Ouedraogo JB, Alcock D, Drury E, Auburn S, Koch O, Sanders M, Hubbart C, Maslen G, Ruano-Rubio V, Jyothi D, Miles A, O'Brien J, Gamble C, Oyola SO, Rayner JC, Newbold CI, Berriman M, Spencer CC, McVean G, Day NP, White NJ, Bethell D, Dondorp AM, Plowe CV, Fairhurst RM, Kwiatkowski DP.

Nat Genet. 2013 Jun;45(6):648-55. doi: 10.1038/ng.2624. Epub 2013 Apr 28.

PMID:
23624527
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A cell-surface phylome for African trypanosomes.

Jackson AP, Allison HC, Barry JD, Field MC, Hertz-Fowler C, Berriman M.

PLoS Negl Trop Dis. 2013;7(3):e2121. doi: 10.1371/journal.pntd.0002121. Epub 2013 Mar 21.

PMID:
23556014
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Comparative study of transcriptome profiles of mechanical- and skin-transformed Schistosoma mansoni schistosomula.

Protasio AV, Dunne DW, Berriman M.

PLoS Negl Trop Dis. 2013;7(3):e2091. doi: 10.1371/journal.pntd.0002091. Epub 2013 Mar 14.

PMID:
23516644
[PubMed - indexed for MEDLINE]
Free PMC Article

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