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Items: 1 to 20 of 61

1.

Rare recombination events generate sequence diversity among balancer chromosomes in Drosophila melanogaster.

Miller DE, Cook KR, Yeganeh Kazemi N, Smith CB, Cockrell AJ, Hawley RS, Bergman CM.

Proc Natl Acad Sci U S A. 2016 Mar 8;113(10):E1352-61. doi: 10.1073/pnas.1601232113. Epub 2016 Feb 22.

2.

Unique transposon landscapes are pervasive across Drosophila melanogaster genomes.

Rahman R, Chirn GW, Kanodia A, Sytnikova YA, Brembs B, Bergman CM, Lau NC.

Nucleic Acids Res. 2015 Dec 15;43(22):10655-72. doi: 10.1093/nar/gkv1193. Epub 2015 Nov 17.

3.

Dynamics of Wolbachia pipientis Gene Expression Across the Drosophila melanogaster Life Cycle.

Gutzwiller F, Carmo CR, Miller DE, Rice DW, Newton IL, Hawley RS, Teixeira L, Bergman CM.

G3 (Bethesda). 2015 Oct 23;5(12):2843-56. doi: 10.1534/g3.115.021931.

4.

Drosophila innate immunity: regional and functional specialization of prophenoloxidases.

Dudzic JP, Kondo S, Ueda R, Bergman CM, Lemaitre B.

BMC Biol. 2015 Oct 1;13:81. doi: 10.1186/s12915-015-0193-6.

5.

Strain-specific and pooled genome sequences for populations of Drosophila melanogaster from three continents.

Bergman CM, Haddrill PR.

F1000Res. 2015 Jan 29;4:31. doi: 10.12688/f1000research.6090.1. eCollection 2015.

6.

Long-read, whole-genome shotgun sequence data for five model organisms.

Kim KE, Peluso P, Babayan P, Yeadon PJ, Yu C, Fisher WW, Chin CS, Rapicavoli NA, Rank DR, Li J, Catcheside DE, Celniker SE, Phillippy AM, Bergman CM, Landolin JM.

Sci Data. 2014 Nov 25;1:140045. doi: 10.1038/sdata.2014.45. eCollection 2014.

7.

An age-of-allele test of neutrality for transposable element insertions.

Blumenstiel JP, Chen X, He M, Bergman CM.

Genetics. 2014 Feb;196(2):523-38. doi: 10.1534/genetics.113.158147. Epub 2013 Dec 13.

8.

Population genomics of the Wolbachia endosymbiont in Drosophila melanogaster.

Richardson MF, Weinert LA, Welch JJ, Linheiro RS, Magwire MM, Jiggins FM, Bergman CM.

PLoS Genet. 2012;8(12):e1003129. doi: 10.1371/journal.pgen.1003129. Epub 2012 Dec 20.

9.

Evolutionary genomics of transposable elements in Saccharomyces cerevisiae.

Carr M, Bensasson D, Bergman CM.

PLoS One. 2012;7(11):e50978. doi: 10.1371/journal.pone.0050978. Epub 2012 Nov 30.

10.
11.

BioContext: an integrated text mining system for large-scale extraction and contextualization of biomolecular events.

Gerner M, Sarafraz F, Bergman CM, Nenadic G.

Bioinformatics. 2012 Aug 15;28(16):2154-61. doi: 10.1093/bioinformatics/bts332. Epub 2012 Jun 17.

12.

A switch in pathogenic mechanism in myelin oligodendrocyte glycoprotein-induced experimental autoimmune encephalomyelitis in IFN-γ-inducible lysosomal thiol reductase-free mice.

Bergman CM, Marta CB, Maric M, Pfeiffer SE, Cresswell P, Ruddle NH.

J Immunol. 2012 Jun 15;188(12):6001-9. doi: 10.4049/jimmunol.1101898. Epub 2012 May 14.

13.

Whole genome resequencing reveals natural target site preferences of transposable elements in Drosophila melanogaster.

Linheiro RS, Bergman CM.

PLoS One. 2012;7(2):e30008. doi: 10.1371/journal.pone.0030008. Epub 2012 Feb 9.

14.

The Drosophila melanogaster Genetic Reference Panel.

Mackay TF, Richards S, Stone EA, Barbadilla A, Ayroles JF, Zhu D, Casillas S, Han Y, Magwire MM, Cridland JM, Richardson MF, Anholt RR, Barrón M, Bess C, Blankenburg KP, Carbone MA, Castellano D, Chaboub L, Duncan L, Harris Z, Javaid M, Jayaseelan JC, Jhangiani SN, Jordan KW, Lara F, Lawrence F, Lee SL, Librado P, Linheiro RS, Lyman RF, Mackey AJ, Munidasa M, Muzny DM, Nazareth L, Newsham I, Perales L, Pu LL, Qu C, Ràmia M, Reid JG, Rollmann SM, Rozas J, Saada N, Turlapati L, Worley KC, Wu YQ, Yamamoto A, Zhu Y, Bergman CM, Thornton KR, Mittelman D, Gibbs RA.

Nature. 2012 Feb 8;482(7384):173-8. doi: 10.1038/nature10811.

15.

pubmed2ensembl: a resource for mining the biological literature on genes.

Baran J, Gerner M, Haeussler M, Nenadic G, Bergman CM.

PLoS One. 2011;6(9):e24716. doi: 10.1371/journal.pone.0024716. Epub 2011 Sep 29.

16.

The GNAT library for local and remote gene mention normalization.

Hakenberg J, Gerner M, Haeussler M, Solt I, Plake C, Schroeder M, Gonzalez G, Nenadic G, Bergman CM.

Bioinformatics. 2011 Oct 1;27(19):2769-71. doi: 10.1093/bioinformatics/btr455. Epub 2011 Aug 3.

17.

Annotating genes and genomes with DNA sequences extracted from biomedical articles.

Haeussler M, Gerner M, Bergman CM.

Bioinformatics. 2011 Apr 1;27(7):980-6. doi: 10.1093/bioinformatics/btr043. Epub 2011 Feb 16.

18.

A large palindrome with interchromosomal gene duplications in the pericentromeric region of the D. melanogaster Y chromosome.

Méndez-Lago M, Bergman CM, de Pablos B, Tracey A, Whitehead SL, Villasante A.

Mol Biol Evol. 2011 Jul;28(7):1967-71. doi: 10.1093/molbev/msr034. Epub 2011 Feb 5.

19.

Gene expression divergence recapitulates the developmental hourglass model.

Kalinka AT, Varga KM, Gerrard DT, Preibisch S, Corcoran DL, Jarrells J, Ohler U, Bergman CM, Tomancak P.

Nature. 2010 Dec 9;468(7325):811-4. doi: 10.1038/nature09634.

PMID:
21150996
20.

REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila.

Gallo SM, Gerrard DT, Miner D, Simich M, Des Soye B, Bergman CM, Halfon MS.

Nucleic Acids Res. 2011 Jan;39(Database issue):D118-23. doi: 10.1093/nar/gkq999. Epub 2010 Oct 21.

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